LOCUS       XM_006255917            1796 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RT1 class Ib, locus S3 (RT1-S3),
            transcript variant X1, mRNA.
ACCESSION   XM_006255917
VERSION     XM_006255917.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006255917.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006255917.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1796
                     /gene="RT1-S3"
                     /gene_synonym="H2-T23; RT-BM1; RT1-BM1; RTBM1"
                     /note="RT1 class Ib, locus S3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 57 ESTs, 1254 Proteins, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     198 samples with support for all annotated introns"
                     /db_xref="GeneID:294228"
                     /db_xref="RGD:735037"
     CDS             95..1192
                     /gene="RT1-S3"
                     /gene_synonym="H2-T23; RT-BM1; RT1-BM1; RTBM1"
                     /codon_start=1
                     /product="RT1 class Ib, locus S3 isoform X1"
                     /protein_id="XP_006255979.1"
                     /db_xref="GeneID:294228"
                     /db_xref="RGD:735037"
                     /translation="MRMLPPAYLLQLLAGTMVLTQTSSHSLRYFYTALSRPGLGEPRF
                     IVVGYVDDTQFVRYDSDVENPRMEPRARWMEQEEPAYWERETRKARDTGRNFKVNLRT
                     LLRYYNQSDDESHTLQWMYGCDVGPDGHLLRGYCQEAYDGRDYISLNEDLRSWTATDM
                     ASQASKIKSEEVGEAHHQRAYLQGPCVEWLHTYLHLGKETLLRSDPPKAHVTLHPRPE
                     GDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPSGEE
                     LKYTCHVEHEGLPEPLALRWEPSPFTDSSMPVIVVLGAVAIIGAVAIIGAVAIIGAVV
                     RRRKRNTGEKGSYAHVLGSKAFQISDWPQKA"
ORIGIN      
        1 aggcgtctgt agaagccaat cagcagcaca gaagttccaa agtacgagtc aacagaaaca
       61 caacccacat tcatgttttt cacagtccct gggcatgagg atgttacctc ctgcctattt
      121 gctccaacta ctggcaggca ccatggtcct gacccagact agctcacact cgctgcggta
      181 tttctacacc gccctgtccc ggcccggcct cggggagccc aggttcattg tcgttggcta
      241 cgtggacgac acgcagttcg tgcgctatga cagcgatgtg gagaatccga ggatggagcc
      301 acgggcgcgg tggatggagc aggaggagcc ggcatattgg gagcgggaga ctcggaaagc
      361 cagggacacc gggaggaact tcaaagtgaa tctgaggacc ctgctccgct actacaatca
      421 gagtgacgac gaatctcaca cgctgcagtg gatgtacggc tgcgacgtgg ggcccgatgg
      481 gcacctgctc cgcggttatt gtcaggaggc ttatgacggc cgggattata tctccttgaa
      541 cgaggacctg cgctcctgga ccgcgactga catggcctca caggcctcta agatcaagtc
      601 agaggaagtt ggtgaggccc atcaccagag ggcctacctg caaggtcctt gcgtggagtg
      661 gctccacaca tacctacatc tgggaaagga gacgctgctg cgctcagacc ccccaaaggc
      721 acatgtgacc cttcacccca gacctgaagg tgatgtcacc ctgaggtgct gggccctggg
      781 cttctaccct gctgacatca ccttgacctg gcaattgaat ggggaggacc tgacccagga
      841 catggagctt gtggagacca ggcctgcagg ggatggaacc ttccagaagt gggcagctgt
      901 ggtagtgcct tctggggagg agctgaagta cacatgccat gtggagcatg agggactgcc
      961 tgaacctctc gccctgagat gggagccttc tccattcacc gactccagca tgccagtgat
     1021 tgttgtcctt ggagctgtgg ccatcattgg agctgtggcc atcattggag ctgtggccat
     1081 cattggagct gttgtgagga ggaggaagag aaacacaggt gaaaaaggca gctatgctca
     1141 tgttctaggc agcaaggctt tccagatctc tgactggcct cagaaggcat gaaaagggtc
     1201 tctcagattt agacatttga atgactgggc atctttacaa tgacttcagg actcttgttc
     1261 tattgcttca gacagttgcc tcgtggggct gagcgacaag ttctgactaa acatctgagg
     1321 gagctgcttc ccctgaggac aatgtgaaga actggcaatc ccagaccttc ttgcctccct
     1381 ggacacctga cttcacaaca gaaaataatc tgactctggg ctgggtgttt cctattgctt
     1441 ttatctgcac tgagtggaaa tgcggtttcc aacagtgtaa cgcagtaccg ttgtgtggtg
     1501 gtagtgacat tgcacacagg tttgtgagct gggggtgtga tgtgcttttg ttactgtagg
     1561 cagaacaagc tagaagtcca ccattcctct tatggtcatt gttttaaaac aaaacaaatg
     1621 ctggagagat ggctcagtgt taagagcact gacttctctt acagaggtcc tggttcaaat
     1681 cccagcaacc acatggtggc tcacaaccat atgtaatgag atctgatgct ctcttctgat
     1741 gtgtctgaac acagctatat atgataaata aatctaaaaa atatttttta aatgaa
//
