LOCUS       NM_001008855            1827 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus RT1 class Ib, locus N3 (RT1-N3), mRNA.
ACCESSION   NM_001008855 XM_579248
VERSION     NM_001008855.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Hurt P, Walter L, Sudbrak R, Klages S, Muller I, Shiina T, Inoko H,
            Lehrach H, Gunther E, Reinhardt R and Himmelbauer H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Kirisits MJ, Sawai H, Kunz HW and Gill TJ 3rd.
  TITLE     Multiple TL-like loci in the grc-G/C region of the rat
  JOURNAL   Immunogenetics 39 (5), 301-315 (1994)
   PUBMED   8168848
REFERENCE   3  (bases 1 to 1827)
  AUTHORS   Kurtin,P.S. and Halvorson,M.
  TITLE     Can a 'fishbone' prevent peritonitis?
  JOURNAL   Nephrol News Issues 6 (11), 60-62 (1992)
   PUBMED   1300431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM122995.1 and BC158567.1.
            
            On Oct 23, 2009 this sequence version replaced NM_001008855.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: L23128.1, BC158567.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                FM122995.1         1-27
            28-1827             BC158567.1         1-1800
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1827
                     /gene="RT1-N3"
                     /note="RT1 class Ib, locus N3"
                     /db_xref="GeneID:24750"
                     /db_xref="RGD:1598370"
     exon            1..355
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     CDS             259..1440
                     /gene="RT1-N3"
                     /note="RT1 class Ib gene, H2-TL-like, grc region (N3)"
                     /codon_start=1
                     /product="RT1 class Ib, locus N3"
                     /protein_id="NP_001008855.1"
                     /db_xref="GeneID:24750"
                     /db_xref="RGD:1598370"
                     /translation="MLWVPKAAARWLSALLQILLLNACFSWTWTLVGSHSLRYFSTVM
                     SWPGLREPRIIVSGYIDNMEFLRLDSDAETPRVKPLVPWLEQEGLEYLEQQIHRIRTQ
                     AQQSERNLMTLVRFYNKSMDDFHTLQWQQGCDVGSDGRLLHWYDQLAFDGIDHPTLNK
                     DLRFWTAWTSTVAQISQPELEARLKDNCSELLQKYPEKEKERLLRSDPPRAHVTRHPR
                     PESDVTLRCWALGFYPADITLTWQLNGEDLIQEMEFVETRPAGDGTFQKWASVVVPLG
                     KEQKYTCLVEHEGLSEPLTLRWEPAQDSTTTIILIILPTVSAIALCVAAVATCICLKK
                     KAGERGRHDTQEADGDSPQDSSKIVVDDQEMEDPFWNTENYRTHLGYRSGTLGFLSLS
                     P"
     exon            356..625
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     exon            626..877
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     exon            878..1153
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1267
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1300
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1347
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1804
                     /gene="RT1-N3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actttatcag caagggtgag ggcaagaggc tagcaggatg taggccggag aattgtcaga
       61 cctgttggtg gcttctgcca ccggaagaat ttagaacata aaatagatga tggatttggg
      121 acaatagatt ctgcacccag agcttctgtc acttggttac ttttaaaatt aagattgcct
      181 ggtgttagtt gggttctgag attatccaat ccctgtcgct ctggtttaca aagttgtcca
      241 agatcagccc agacccatat gctctgggtt cctaaggctg ctgcgcgctg gctcagtgcc
      301 cttctccaga tcctgctcct gaatgcctgc ttctcctgga cttggaccct tgtgggctca
      361 cactccctgc ggtatttctc cactgtcatg tcctggcccg gcctccggga gccaaggata
      421 atagtcagcg gctacataga taatatggag ttcctgcgct tggacagcga cgccgaaact
      481 ccaagggtga agcccctagt accatggctg gagcaggagg ggctggaata cttggagcag
      541 cagattcata gaatcaggac tcaagcacaa cagtctgaaa ggaacctgat gacgctggtt
      601 cgtttttaca ataagagcat ggacgacttc cacacactac agtggcagca aggctgcgat
      661 gtggggtcag atgggcgcct gcttcactgg tacgaccagc tcgcctttga tggcatagat
      721 caccccaccc tgaacaaaga cctgcgtttc tggacagcgt ggaccagcac tgtagctcag
      781 atctctcagc ccgagttaga agctcgcctg aaggacaact gctcagagct gctgcagaaa
      841 tacccagaaa aggagaagga gaggctgctg cgttcagacc cgccaagggc acatgtgacc
      901 cggcacccca gacctgaaag tgatgtgacc ctgaggtgct gggccctggg tttctaccct
      961 gctgacatca ccctgacctg gcagttgaat ggggaggacc tgatccaaga aatggagttt
     1021 gtggagacca ggcctgcagg ggatggaacc ttccagaagt gggcatctgt ggtggtgcct
     1081 ctagggaagg agcagaagta cacatgcctt gtggagcatg aggggctgtc agagccgctc
     1141 accctgagat gggagcctgc ccaggactcc accactacaa tcattctaat tattctaccc
     1201 actgtctctg caattgccct ctgcgttgct gctgtggcaa cttgcatatg cctgaagaag
     1261 aaggcaggtg aaagaggaag gcacgacacc caggaagcag atggagacag tccccaagac
     1321 tctagcaaga ttgttgtgga tgatcaggag atggaggatc ccttttggaa tactgagaac
     1381 tacagaactc atctaggata ccgctctggg actttaggat ttctaagctt gtcaccctaa
     1441 aagaggtacc agcctgtcct ccctgctcca gcagaacact agagtccccc tgcctctcct
     1501 tcatgaccag ggcaggagca ggccagttct taccacactg gacagaaact ggtccctcct
     1561 ttctgtcttg aagatctgtc cacctctctc ttctctaagt ggcttcttgt ctggcatttt
     1621 gccatgttgt caagggaccc agagaagggg ccaagctcca tcctctcaca cacctcattc
     1681 tggctactac ccccaatgtt tcagtgacat ttaatcaggt caagttggga ccaatgactt
     1741 tgatgcagaa aagaattgtg gactagtaga gatggggttt aataaaaaaa ttctattttt
     1801 ggtaaaaaaa aaaaaaaaaa aaaaaaa
//
