LOCUS       NM_001008854            1390 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RT1 class Ib, locus N2 (RT1-N2), mRNA.
ACCESSION   NM_001008854
VERSION     NM_001008854.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1390)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
REFERENCE   2  (bases 1 to 1390)
  AUTHORS   Kirisits,M.J., Sawai,H., Kunz,H.W. and Gill,T.J. 3rd.
  TITLE     Multiple TL-like loci in the grc-G/C region of the rat
  JOURNAL   Immunogenetics 39 (5), 301-315 (1994)
   PUBMED   8168848
REFERENCE   3  (bases 1 to 1390)
  AUTHORS   Kurtin,P.S. and Halvorson,M.
  TITLE     Can a 'fishbone' prevent peritonitis?
  JOURNAL   Nephrol News Issues 6 (11), 60 (1992)
   PUBMED   1300431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883048.1.
            
            On Oct 23, 2009 this sequence version replaced NM_001008854.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132271,
                              SAMD00132279 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-91                BX883048.1         332807-332897       c
            92-361              BX883048.1         332369-332638       c
            362-613             BX883048.1         331934-332185       c
            614-889             BX883048.1         330932-331207       c
            890-1006            BX883048.1         330638-330754       c
            1007-1038           BX883048.1         330117-330148       c
            1039-1085           BX883048.1         329947-329993       c
            1086-1390           BX883048.1         329506-329810       c
FEATURES             Location/Qualifiers
     source          1..1390
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1390
                     /gene="RT1-N2"
                     /note="RT1 class Ib, locus N2"
                     /db_xref="GeneID:360323"
                     /db_xref="RGD:1595850"
     CDS             1..1134
                     /gene="RT1-N2"
                     /note="RT1 class Ib gene, H2-TL-like, grc region(N2); MHC
                     class I TL-like; cell surface antigen"
                     /codon_start=1
                     /product="RT1 class Ib, locus N2 precursor"
                     /protein_id="NP_001008854.1"
                     /db_xref="GeneID:360323"
                     /db_xref="RGD:1595850"
                     /translation="MLWVPKAGALWLSALLLLLNASFSWTWTPEGSHSLRYFSIVMSW
                     LGLREPRIIVSGCIDDTEFVRLDTNKEIVSLKPLVPLQEQEGLEYWEQQVHKVKTQEQ
                     QSARNLMMLVRFYNKSMDDFHTLQWQQGCDVGSDGRLLHWYDQLAFDGVDHPTLNKDL
                     RFWTAWTSTVAQISQPELEARLKDNCSELLQKYPEKEKERLLRSDPPRAHVTRHPRPE
                     GDVTLRCWALGFYPADITLTWQLNGEDLIQEMEFVETRPAGDGTFQKWASVVVPLGKE
                     QKYTCLVEHEGLSEPLTLRWEPTQDSTTTIILIILPTVSAIVLCVAAAVAICICLKKK
                     AGERGRHDTRKQMETVPKTLAGLLWMIRRSRVPLGILRTTELI"
     exon            1..91
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            92..361
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            362..613
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            614..889
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1006
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1038
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1085
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1390
                     /gene="RT1-N2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgctctggg ttcccaaggc tggtgcgctc tggctcagtg cccttctcct gctcctgaat
       61 gcctccttct cctggacttg gacccctgag ggctcacact ccctgcggta tttctccatt
      121 gtcatgtcct ggctgggcct ccgggagcca cggatcatag tcagcggctg catagatgat
      181 acggagttcg tgcgcttgga caccaacaag gagattgtaa gcctgaagcc cctagtgcct
      241 ttgcaggagc aggaggggct agagtactgg gagcagcagg ttcataaagt caagactcaa
      301 gaacaacagt ctgcaaggaa cctgatgatg ctggttcgtt tttacaataa gagcatggac
      361 gacttccaca cactacagtg gcagcaaggc tgcgatgtgg ggtcagatgg gcgcctgctt
      421 cactggtacg accagctcgc ctttgatggt gtagatcacc ccaccctgaa caaagacctg
      481 cgtttctgga cagcgtggac cagcactgta gctcagatat ctcagcctga gttagaagct
      541 cgcctgaagg acaactgctc agagctgctg cagaaatacc cagaaaagga aaaggagagg
      601 ctgctgcgtt cagacccgcc acgggcacat gtgacccggc accccagacc tgaaggtgat
      661 gtcaccctga ggtgctgggc cctgggtttc taccctgctg acatcaccct gacctggcag
      721 ttgaatgggg aggacctgat ccaagaaatg gagtttgtgg agaccaggcc tgcaggggat
      781 ggaaccttcc agaagtgggc atctgtggtg gtgcccctag ggaaggagca gaagtacaca
      841 tgccttgtgg agcatgaggg gctgtcagag ccgctcaccc tgagatggga gcctacccag
      901 gattccacca ctacaatcat tctaattatt ctacccactg tctctgcaat tgtcctctgt
      961 gttgctgctg ctgtggcaat ttgcatatgc ctgaagaaga aggcaggtga aagaggaagg
     1021 cacgacacca ggaagcagat ggagacagtc cccaagactc ttgcaggatt gttgtggatg
     1081 atcaggagat cgagggtccc tcttggaata ctgagaacta cagaactcat ctaggattcc
     1141 gctctgggac tttaggattg cttagcttgt cattctaaaa gaggtaccag cctgtcctcc
     1201 ctgctcccac tgtgggtgtt gtttccctgt ggctttcaga aggctttgct tagtctcctc
     1261 actcaggaac atgctcaaca gaacacgtgc agctgtgccc cctcccccac cgccctgtag
     1321 gatcgccttc ctgctgtgcc ccctccccca ccgccctgta ggatcccctg cctgctgtgc
     1381 cccctccccc
//
