LOCUS       NM_001008853             999 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus RT1 class I, locus M6, gene 2 (RT1-M6-2), mRNA.
ACCESSION   NM_001008853 XM_345076
VERSION     NM_001008853.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Lambracht-Washington D, Moore YF, Wonigeit K and Lindahl KF.
  TITLE     Structure and expression of MHC class Ib genes of the central M
            region in rat and mouse: M4, M5, and M6
  JOURNAL   Immunogenetics 60 (3-4), 131-145 (2008)
   PUBMED   18324395
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX883052.1.
            
            On Jan 5, 2005 this sequence version replaced XM_345076.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN09345238, SAMN09345329
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..999
                     /gene="RT1-M6-2"
                     /note="RT1 class I, locus M6, gene 2"
                     /db_xref="GeneID:365527"
                     /db_xref="RGD:1595815"
     CDS             1..999
                     /gene="RT1-M6-2"
                     /note="MHC class Ib antigen"
                     /codon_start=1
                     /product="RT1 class I, locus M6, gene 2 precursor"
                     /protein_id="NP_001008853.1"
                     /db_xref="GeneID:365527"
                     /db_xref="RGD:1595815"
                     /translation="MGAPVLHATLLLLSAFLALTQTKNQSFAGSHSRQYLVTATTSRP
                     GLRDPHVFIVGYVDHMPFMRFDSDGVAQRIQARGPWVKQMGPEYLEMERKNAERYSHR
                     ARENLRFAIQVYNQSDKGHHRHAFDGQHYISLNSDLTTWSVADSTAQITKRRWEADGV
                     AEAFSHFLKVSCVEWLQKHLETGKETLQRSDPPKTHVTHHPRPEGDATLRCWALDFYP
                     ADITLTWQEEEEEEELTQDMELVETRPAGDGTFQKWASVVVPSGEEQKYTCHVYHEGL
                     PEPLTLRWKPATWPVVGITVGVVLLGFVTIGALIAIVTMRKKRADPVDPVDLMDPV"
     exon            1..85
                     /gene="RT1-M6-2"
                     /inference="alignment:Splign:2.1.0"
     exon            86..358
                     /gene="RT1-M6-2"
                     /inference="alignment:Splign:2.1.0"
     exon            359..571
                     /gene="RT1-M6-2"
                     /inference="alignment:Splign:2.1.0"
     exon            572..853
                     /gene="RT1-M6-2"
                     /inference="alignment:Splign:2.1.0"
     exon            854..961
                     /gene="RT1-M6-2"
                     /inference="alignment:Splign:2.1.0"
     exon            962..999
                     /gene="RT1-M6-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggggctc cagtgctgca tgccaccctc ctgctgctct cagccttcct ggctctgacc
       61 caaaccaaga accagagttt tgctggttca cactccaggc agtatttggt aaccgcgacc
      121 acgtctcgac cgggtcttag agatccccat gtcttcattg ttggctatgt ggaccacatg
      181 ccatttatgc gctttgacag tgatggagtt gctcagagga tccaggcaag aggaccttgg
      241 gtgaagcaga tggggcctga gtatttggaa atggagagaa agaatgcgga gaggtattca
      301 cacagggctc gagaaaacct gcgattcgca atccaggtct ataaccagag cgataaaggg
      361 catcatagac atgcttttga cggccaacat tacatcagcc tgaactcgga cctgacaaca
      421 tggagtgtcg cagacagcac agctcagatc accaagcgac ggtgggaggc agatggtgta
      481 gcagaggcct tcagtcactt cttgaaagtc tcttgtgttg aatggctgca gaagcacttg
      541 gagacaggga aggagactct acagcgctca gatcccccaa agacacatgt gacccatcac
      601 cccagacctg aaggtgatgc caccctgagg tgttgggccc tggacttcta ccctgctgac
      661 atcaccctga cctggcagga ggaggaggag gaggaggaac tgacacagga catggagctt
      721 gtggagacca ggcctgcagg ggatggaacc ttccagaagt gggcatctgt ggtggtgcct
      781 tctggggagg agcagaaata cacttgtcat gtgtaccatg aggggctgcc tgagcccctc
      841 acactgagat ggaaaccagc aacttggcct gtggttggaa taactgttgg tgtagttctc
      901 cttgggtttg tcaccattgg agctctgatt gccattgtga ccatgaggaa gaagagagca
      961 gaccctgtgg atcctgtgga ccttatggat ccagtgtga
//
