LOCUS       NM_001168343            1026 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus RT1 class Ib, locus M4 (RT1-M4), mRNA.
ACCESSION   NM_001168343 XM_001075582 XM_227941
VERSION     NM_001168343.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Lambracht-Washington D, Moore YF, Wonigeit K and Lindahl KF.
  TITLE     Structure and expression of MHC class Ib genes of the central M
            region in rat and mouse: M4, M5, and M6
  JOURNAL   Immunogenetics 60 (3-4), 131-145 (2008)
   PUBMED   18324395
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Lambracht-Washington D and Fischer Lindahl K.
  TITLE     Active MHC class Ib genes in rat are pseudogenes in the mouse
  JOURNAL   Immunogenetics 56 (2), 118-121 (2004)
   PUBMED   15069589
REFERENCE   3  (bases 1 to 1026)
  AUTHORS   Gunther E and Walter L.
  TITLE     The major histocompatibility complex of the rat (Rattus norvegicus)
  JOURNAL   Immunogenetics 53 (7), 520-542 (2001)
   PUBMED   11685465
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883052.1.
            
            On or before Dec 3, 2009 this sequence version replaced
            XM_001075582.1, XM_227941.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760389
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                BX883052.1         48532-48604         c
            74-340              BX883052.1         48027-48293         c
            341-619             BX883052.1         47520-47798         c
            620-895             BX883052.1         45089-45364         c
            896-1026            BX883052.1         44845-44975         c
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1026
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /note="RT1 class Ib, locus M4"
                     /db_xref="GeneID:309584"
                     /db_xref="RGD:1562593"
     CDS             1..1026
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /note="MHC class Ib antigen"
                     /codon_start=1
                     /product="RT1 class Ib, locus M4 precursor"
                     /protein_id="NP_001161815.1"
                     /db_xref="GeneID:309584"
                     /db_xref="RGD:1562593"
                     /translation="MGSVVPRIFFLLLVTSLAPTQAGAGSHSLRYFTTTLYDPGYRKP
                     RFTVVGYVDNTQIVNFDSHLASQRVEPRVPFIAQDPEHLEELTRLGRGILILGRIELW
                     TLFGYHSQRENESHTVQWLFGCDIGPDRRLLRGYKHVAYEGQDYISLTEDLRSWVAVD
                     TEEAQITRRKWEASGIATSWRSFLEGRCVKWLLKYLDKGKEMLQRADPPKTNVAHHPR
                     PEGDVTLRCWALDFYPADIILTWQRDEEDLTQDMDLVETRPTGNGTFQKWASVVVPSG
                     EEHRYTCHVLHEGLLEPLILRWEPSPSPTTPIMGIIAGLVLLGVLVTGTVAAIMRRRK
                     SAGKDGV"
     exon            1..73
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /inference="alignment:Splign:2.1.0"
     exon            74..340
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /inference="alignment:Splign:2.1.0"
     exon            341..619
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /inference="alignment:Splign:2.1.0"
     exon            620..895
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1026
                     /gene="RT1-M4"
                     /gene_synonym="RT1.M4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggggtccg tggtgccgcg catcttcttt ttgctgctgg tgacctccct ggccccaact
       61 caggctggcg cgggctcaca ctccctgcgg tatttcacca ccaccttgta cgatcctggc
      121 taccgcaaac ctcggttcac cgtcgtgggc tacgtggaca acacacagat cgtgaacttc
      181 gacagccact tggcgagtca gcgggtggag ccgcgggtgc cgtttatagc gcaggatcct
      241 gagcatttgg aggagctgac acgcctaggc agggggatct taatacttgg ccgaatcgaa
      301 ctgtggaccc tgttcggtta ccatagccag agagagaatg agtctcacac tgtccagtgg
      361 ctattcggct gtgacatagg gccagaccgt cgcctcctcc gtgggtataa gcacgttgct
      421 tatgaaggcc aggattacat ctctctaact gaggacctgc gctcctgggt tgcggtggat
      481 accgaggagg ctcagatcac caggcgcaag tgggaggcat ctggtattgc tacatcatgg
      541 aggtctttct tggagggcag gtgcgtgaag tggcttctca aatacctgga taaagggaag
      601 gagatgctgc agcgtgcaga tccccccaaa acaaacgtgg ctcatcaccc tagacctgaa
      661 ggtgatgtca ccctgaggtg ctgggccttg gacttctacc ctgctgacat catcctgact
      721 tggcaaaggg atgaggagga cctgacccag gacatggacc ttgtagagac cagacctaca
      781 gggaatggaa ctttccagaa gtgggcatct gtggtggtgc cttcaggaga agagcataga
      841 tacacatgcc atgtgctgca tgaggggctg cttgagcccc tcatcctgag atgggagcct
      901 tcaccctccc ccaccactcc catcatgggg atcattgctg gtctggttct ccttggagtt
      961 ttggtcactg gaactgtggc tgccattatg aggaggagga agagtgcagg taaggatggt
     1021 gtttga
//
