LOCUS       NM_001001717            1379 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RT1 class Ib, locus M2 (RT1-M2), mRNA.
ACCESSION   NM_001001717
VERSION     NM_001001717.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1379)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
REFERENCE   2  (bases 1 to 1379)
  AUTHORS   Moore,Y.F., Lambracht-Washington,D., Tabaczewski,P. and Fischer
            Lindahl,K.
  TITLE     Murine MHC class Ib gene, H2-M2, encodes a conserved
            surface-expressed glycoprotein
  JOURNAL   Immunogenetics 56 (1), 1-11 (2004)
   PUBMED   15045471
REFERENCE   3  (bases 1 to 1379)
  AUTHORS   Gunther,E. and Walter,L.
  TITLE     The major histocompatibility complex of the rat (Rattus norvegicus)
  JOURNAL   Immunogenetics 53 (7), 520-542 (2001)
   PUBMED   11685465
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Sep 23, 2022 this sequence version replaced NM_001001717.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.58636.1,
                                           SRR26643292.62132.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                JAXUCZ010000020.1  984174-984268
            96-365              JAXUCZ010000020.1  984456-984725
            366-641             JAXUCZ010000020.1  984946-985221
            642-917             JAXUCZ010000020.1  985904-986179
            918-1379            JAXUCZ010000020.1  986301-986762
FEATURES             Location/Qualifiers
     source          1..1379
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1379
                     /gene="RT1-M2"
                     /note="RT1 class Ib, locus M2"
                     /db_xref="GeneID:24988"
                     /db_xref="RGD:3493"
     exon            1..95
                     /gene="RT1-M2"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..1057
                     /gene="RT1-M2"
                     /codon_start=1
                     /product="RT1 class Ib, locus M2 precursor"
                     /protein_id="NP_001001717.1"
                     /db_xref="GeneID:24988"
                     /db_xref="RGD:3493"
                     /translation="METSAILTLHLLLSASLALTQSFKGSHSLRYFDIAVSRPGLEET
                     HYMTLGYVDDTEFVHFNNEAVNPRFEPRVPWMEQMGQKYWDDQTRIAKVAEQQIRVYF
                     QKLRGYYNQSQNSSHTIQRMTGCYIGPDGHLLHAYRQFGYDGQDYLTLNEDLSTWTAA
                     DSAAEITHREWKATNEAEFWRVYLEGPCMVWLFKYLTVGNETLLRADPPKVYVTHHPR
                     PEGDITLRCWALGFYPSDITLIWQRDGEDLTQDMDVIETRPAGDGTFQKWAAVVVPSG
                     KEQNYTCYVEHEGLPEPLTLRWSRPPQSFIPTIVVAVGLVLLGASVVTLVIWKKSSGG
                     GRGSLRFLSN"
     exon            96..365
                     /gene="RT1-M2"
                     /inference="alignment:Splign:2.1.0"
     exon            366..641
                     /gene="RT1-M2"
                     /inference="alignment:Splign:2.1.0"
     exon            642..917
                     /gene="RT1-M2"
                     /inference="alignment:Splign:2.1.0"
     exon            918..1379
                     /gene="RT1-M2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgactctctt caactccaga gaatggagac ttcagcaatc ctcactctcc acctgctgct
       61 gagcgcttct ttggccctga cccagtcctt taaaggctcc cactccttgc ggtactttga
      121 catcgcagtg tcaaggcctg gcctagagga gacccactac atgactcttg gctacgtgga
      181 tgacacagag tttgtgcatt tcaacaatga ggcagtgaat ccgaggtttg agccccgggt
      241 gccctggatg gaacagatgg gacagaagta ctgggatgac cagacacgaa ttgccaaagt
      301 cgcggaacag cagattagag tgtactttca gaaactgcga ggctactaca accagagcca
      361 gaacagttct cacaccatcc aaaggatgac tggctgctac attggaccag acggacacct
      421 acttcacgca taccgtcagt ttggatatga tggacaagat tacctcactt tgaatgaaga
      481 tctgagcacc tggactgcgg cagattcggc agctgagatc acccatagag agtggaaggc
      541 aactaatgaa gctgagttct ggagggtcta cttggagggc ccttgcatgg tgtggctctt
      601 taaatacctg acagtgggaa atgagactct actgcgcgca gatcccccca aagtatatgt
      661 gacccatcac cccagacctg aaggtgatat caccctgagg tgctgggccc tgggcttcta
      721 cccttctgac atcaccctga tctggcaaag agatggagag gacctgaccc aggacatgga
      781 cgtaattgag accagacctg caggggatgg aaccttccag aagtgggcag ctgtggtggt
      841 gccttcgggg aaggagcaga attatacatg ctatgtagaa catgaggggc tgcctgaacc
      901 cctcaccctg agatggagta gacctcctca gtcgttcatt cccacaatag tggttgctgt
      961 tggcctggtt ctcctgggag cttctgtggt tacacttgtc atttggaaga agagctcagg
     1021 tggtggaagg ggtagcctga gatttctttc caactgagga actccaatct ccagataagt
     1081 cttctctgcc tccttgttgg gaagggatat ggcctgttat tcccaaaggc acaattcaga
     1141 atgtcataac cacaaatatt tcaatcttaa aagatcaaaa tacaaatttt taaatgtatc
     1201 caaaaccata cgctaaattt aaaggcatat ttacatacac acacacacac acacacacac
     1261 acacacacac actaaacaaa gataggaagg aaggaaggaa ggaaggaagg aagaagggag
     1321 ggagggaagg aaggaaggaa agaacggaaa gcatgataga aaaggggcct ctgtatgaa
//
