LOCUS       NM_001168332            1065 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RT1 class I, M1, gene 5 (RT1-M1-5), mRNA.
ACCESSION   NM_001168332 XM_001059138 XM_001075866
VERSION     NM_001168332.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from BX883051.1.
            
            On or before Dec 3, 2009 this sequence version replaced
            XM_001075866.1, XM_001059138.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760434, SAMN14984027
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                BX883051.1         90932-91004         c
            74-343              BX883051.1         90422-90691         c
            344-619             BX883051.1         89887-90162         c
            620-895             BX883051.1         89439-89714         c
            896-1065            BX883051.1         88904-89073         c
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1065
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /note="RT1 class I, M1, gene 5"
                     /db_xref="GeneID:680842"
                     /db_xref="RGD:1587041"
     CDS             1..1065
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /note="histocompatibility 2, M region locus 9"
                     /codon_start=1
                     /product="RT1 class I, M1, gene 5 precursor"
                     /protein_id="NP_001161804.1"
                     /db_xref="GeneID:680842"
                     /db_xref="RGD:1587041"
                     /translation="MKTFVHQALLLLLIVTLAITGHPKGLHSLNYKQTLLEWPGFLEL
                     QFIAVIYADDIQFLGLNSIWGSSRAENKVPWMDEDEPETSEKVTQSMLDEKDLLTKIM
                     KKVLHIYNYSMTGYHTIQRRRGCYVVPGGHFSHGFVELTFNNHDYIMLNEDLETWSVV
                     GKAAEMIRQDFEEENFAKYMREYLRGPCVEGILGLLQYGEKALLRAGTPKTHVTHKVT
                     ADGKITLRCWALNFYPAEITLIWQKDGSNKTQDVEVIETRPSGDGNFQKWAAVVVPSG
                     EEQRFTCHVEHERLPKPITLRWESPQSINSTMAIAIAVVLGALLMGAVLTFFIWKRRT
                     KGKEKQSLSSWLHGNIKPNL"
     exon            1..73
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /inference="alignment:Splign:2.1.0"
     exon            74..343
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /inference="alignment:Splign:2.1.0"
     exon            344..619
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /inference="alignment:Splign:2.1.0"
     exon            620..895
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1065
                     /gene="RT1-M1-5"
                     /gene_synonym="H2-M9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaaaacct ttgtacacca ggctctcctc ctgctgctca tcgtcactct ggctatcaca
       61 gggcatccaa agggtttaca ctctctgaat tataaacaaa ctctcctgga atggcctggc
      121 tttttggaac tacagtttat cgctgttatc tatgcggatg atatacagtt cctaggactc
      181 aacagcatat gggggagttc gagggcagag aacaaagtac catggatgga tgaggatgaa
      241 ccagagactt cagagaaagt aacacagagc atgctggatg aaaaagatct cttgacaaaa
      301 ataatgaaga aagtgctcca catatacaat tacagcatga ctggttatca cacaatccag
      361 aggaggcgtg gctgttatgt ggtgccagga gggcacttca gtcacggatt cgtagaatta
      421 accttcaata accacgatta tatcatgctg aatgaggacc tggaaacctg gagcgtggtt
      481 ggcaaggccg ctgagatgat caggcaagac tttgaggagg aaaattttgc aaaatacatg
      541 agagaatacc tgcggggtcc atgtgtggaa gggatccttg gactcctgca atatggtgag
      601 aaggccttgc tgagagcagg cactcctaaa acacatgtga cccataaggt cacagctgat
      661 gggaaaataa ccttgaggtg ctgggctttg aacttctacc ctgctgaaat caccttgatc
      721 tggcagaagg atgggagcaa caagacccag gatgtggagg tgatagagac caggccttca
      781 ggggatggaa acttccagaa gtgggcagct gtggtggtgc catctgggga agagcagaga
      841 ttcacatgtc atgtggagca tgagcgtctg cctaagccca tcaccctgag atgggagtct
      901 cctcagtcca tcaactctac catggctatt gctattgctg tggttcttgg agctctgctt
      961 atgggagcag tgttgacttt ttttatatgg aagaggagga ctaaaggtaa ggaaaagcag
     1021 agtctgagtt catggcttca tggaaatatc aagcctaatc tgtaa
//
