LOCUS       NM_001008845            1103 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RT1 class I, locus CE7 (RT1-CE7), mRNA.
ACCESSION   NM_001008845 XM_347319
VERSION     NM_001008845.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Dai,K.Z., Ryan,J.C., Naper,C. and Vaage,J.T.
  TITLE     Identification of MHC Class Ib Ligands for Stimulatory and
            Inhibitory Ly49 Receptors and Induction of Potent NK Cell
            Alloresponses in Rats
  JOURNAL   J Immunol 200 (8), 2847-2859 (2018)
   PUBMED   29531166
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001008845.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN12840117, SAMN16676784
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                JAXUCZ010000020.1  3441753-3441825     c
            74-343              JAXUCZ010000020.1  3441280-3441549     c
            344-619             JAXUCZ010000020.1  3440828-3441103     c
            620-895             JAXUCZ010000020.1  3439581-3439856     c
            896-1015            JAXUCZ010000020.1  3439334-3439453     c
            1016-1048           JAXUCZ010000020.1  3439124-3439156     c
            1049-1103           JAXUCZ010000020.1  3438878-3438932     c
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1103
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /note="RT1 class I, locus CE7"
                     /db_xref="GeneID:368153"
                     /db_xref="RGD:1595786"
     CDS             1..1068
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /note="MHC class I protein; RT1 class I, CE7"
                     /codon_start=1
                     /product="RT1 class I, locus CE7 precursor"
                     /protein_id="NP_001008845.1"
                     /db_xref="GeneID:368153"
                     /db_xref="RGD:1595786"
                     /translation="MGSRAPHTLLLLLAAALARTQPRAGSHSLRYFTTALSRPGLGEP
                     RFISVGYVDDTEFVRFDSDAENPRYEPRAPWMEREGLEYWEQQTRRAKGNQQTFQVNL
                     RTALHYYNQSEDRSHTIQRMYGCDVGSDGSLLRGYEQSAYDGRDYIALNEDLKTWTAA
                     DVAAQITRNKWDQAGVAERRRAYLEGTCMKWLRRYLEHGKETLLRSDPPKAHVTLHPR
                     PEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPPG
                     KEQNYTCRVEHEGLPEPLTLRWEAPPSTDSNMETNVIYVVIGAISAVAIIGAVLAVVR
                     KKNTGGTGGDYTPAPGQPQQL"
     exon            1..73
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
     exon            74..343
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
     exon            344..619
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
     exon            620..895
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1015
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1048
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1103
                     /gene="RT1-CE7"
                     /gene_synonym="RT1-C/E7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggggtcaa gggcacctca cactctgctt ctgctgctgg cggccgccct ggcccggacc
       61 cagccccgcg cgggctcgca ctcgctgcgg tatttcacca cggcgctgtc ccggcccggc
      121 ctcggggagc cccggttcat ctctgtcggc tacgtggacg acacggagtt cgtgcgcttc
      181 gacagcgacg cggagaatcc gagatacgag ccgcgggcgc cgtggatgga gcgggagggg
      241 ctggagtatt gggagcagca gacacggaga gccaagggca accagcagac tttccaagtg
      301 aacctgagga ccgcgctcca ctactacaac cagagcgagg accgctctca caccatccag
      361 aggatgtatg gctgtgacgt ggggtcggac gggagcctcc tccgcgggta tgagcagtcc
      421 gcctacgatg gccgcgatta tatcgccctg aacgaagacc tgaagacctg gacagcagca
      481 gacgtggctg cgcagatcac ccggaacaag tgggatcagg ctggtgttgc agagagacgc
      541 agggcctacc tggagggcac atgcatgaag tggctccgca gatacctgga gcatgggaag
      601 gagacgctgc tgcgctcaga tcccccaaag gcacatgtga cccttcaccc cagacctgaa
      661 ggtgatgtca ccctgaggtg ctgggccctg ggcttctacc ctgctgacat caccctgacc
      721 tggcagttga atggggagga cctgacccag gacatggagc ttgtggagac caggcctgca
      781 ggggatggaa ccttccagaa gtgggcatct gtggtggtgc ctcctgggaa ggagcagaat
      841 tacacatgcc gtgtggagca tgaggggctg cctgagcccc tcaccttgag atgggaggct
      901 cctccatcca ctgactccaa catggaaacc aatgtcattt atgttgtcat tggagccatc
      961 tctgctgtgg ccatcattgg agctgtgttg gctgttgtga ggaagaaaaa cacaggagga
     1021 acaggaggag actacacccc tgctccaggc cagccccaac agctgtgatt tgtctctccc
     1081 agattgtaaa gatgacattc tga
//
