LOCUS       NM_001008842            1135 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RT1 class I, locus CE4 (RT1-CE4), mRNA.
ACCESSION   NM_001008842 XM_579237
VERSION     NM_001008842.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Dai,K.Z., Ryan,J.C., Naper,C. and Vaage,J.T.
  TITLE     Identification of MHC Class Ib Ligands for Stimulatory and
            Inhibitory Ly49 Receptors and Induction of Potent NK Cell
            Alloresponses in Rats
  JOURNAL   J Immunol 200 (8), 2847-2859 (2018)
   PUBMED   29531166
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 7, 2020 this sequence version replaced NM_001008842.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.62401.1,
                                           SRR26643289.43283.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840117,
                                           SAMN12840122 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                JAXUCZ010000020.1  3509084-3509156     c
            74-343              JAXUCZ010000020.1  3508611-3508880     c
            344-619             JAXUCZ010000020.1  3508126-3508401     c
            620-895             JAXUCZ010000020.1  3506884-3507159     c
            896-1039            JAXUCZ010000020.1  3506613-3506756     c
            1040-1069           JAXUCZ010000020.1  3506407-3506436     c
            1070-1117           JAXUCZ010000020.1  3506128-3506175     c
            1118-1135           JAXUCZ010000020.1  3505977-3505994     c
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1135
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /note="RT1 class I, locus CE4"
                     /db_xref="GeneID:414783"
                     /db_xref="RGD:1598234"
     CDS             1..1122
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /note="MHC class I protein"
                     /codon_start=1
                     /product="RT1 class I, locus CE4 precursor"
                     /protein_id="NP_001008842.1"
                     /db_xref="GeneID:414783"
                     /db_xref="RGD:1598234"
                     /translation="MGAMAPPTLLLLVAAALTPTKTRAGSHSLRYFHTAVSRPGLGEP
                     RFISVGYVDDTEFVRYDSDAENPRYEPRARWMEREGPEYWERQTQIAKRNEQVYRVDL
                     STLRGYYNQSEGGSHTYQRMHGCELGSDGSLLRGYMQYAYDGRDYIALNEDLKTWMVK
                     DTAARITRNKWDQAGFGERKRTYLQVECLEWLRKYLELGKETLLRSDPPKVHVTLHPR
                     PEGGVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPSG
                     EEQKYTCHVEHEGLPEPLTQRWEAPPGTDSNMETNVIYVFFGAVAMIGAVAVIGAVVA
                     VVRRRRRRKRNTGGKGDYAPAPGSDSCQSSDVSLADCEA"
     exon            1..73
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            74..343
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            344..619
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            620..895
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1039
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1069
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1117
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1135
                     /gene="RT1-CE4"
                     /gene_synonym="RT1-C/E4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggggcga tggcgccgcc cacgctgctc ctgcttgttg cggccgccct gaccccgacc
       61 aagacgcgcg ccggctcaca ctcgctgcgg tatttccaca ccgccgtgtc ccggcccggc
      121 ctcggggagc cccggttcat ctctgtcggc tacgtggacg acacggagtt cgtgcgctac
      181 gatagcgacg cggagaatcc gagatatgag ccgcgggcgc ggtggatgga gcgggagggg
      241 ccggagtatt gggagaggca gacacagatc gccaagagaa acgagcaggt ttaccgagtg
      301 gacctgagta ccctgcgagg ctactataac cagagcgagg gcggctctca cacctaccag
      361 aggatgcatg gctgtgagtt ggggtcggac gggagcctcc tccgcgggta tatgcagtac
      421 gcctatgacg gccgcgatta catcgccctg aacgaagacc tcaaaacgtg gatggtgaag
      481 gacacagcag cacggatcac cagaaacaag tgggatcagg ctggttttgg agagagaaag
      541 aggacctacc tgcaggtcga gtgcttggag tggctccgca aatacctgga gctcgggaag
      601 gagacactgc tgcgctcaga tccccctaag gtacatgtga cccttcaccc cagacctgaa
      661 ggtggtgtca ccctgaggtg ctgggctctg ggcttctacc ctgctgacat caccctgacc
      721 tggcagttga atggggagga cctgacccag gacatggagc ttgtggagac caggcctgca
      781 ggggatggaa ccttccagaa gtgggcagct gtggtggtgc cttctgggga ggagcagaag
      841 tacacatgcc atgtggagca tgaggggctg cctgagccac ttacccagag atgggaggct
      901 cctccaggca ctgactccaa catggaaacc aatgttattt atgttttctt tggagctgtg
      961 gccatgattg gggctgtggc tgtgattgga gctgtggtgg ctgttgtgag gaggaggagg
     1021 aggaggaaga gaaacacagg tgggaaagga gactacgccc ctgctccagg cagtgacagc
     1081 tgccagagct ctgatgtgtc cctcgcagat tgtgaagcat gaagacagct gcctg
//
