LOCUS       NM_001008841            1167 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RT1 class I, locus CE3 (RT1-CE3), mRNA.
ACCESSION   NM_001008841 XM_579236
VERSION     NM_001008841.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1167)
  AUTHORS   Dai,K.Z., Ryan,J.C., Naper,C. and Vaage,J.T.
  TITLE     Identification of MHC Class Ib Ligands for Stimulatory and
            Inhibitory Ly49 Receptors and Induction of Potent NK Cell
            Alloresponses in Rats
  JOURNAL   J Immunol 200 (8), 2847-2859 (2018)
   PUBMED   29531166
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883046.1.
            
            On Dec 4, 2009 this sequence version replaced NM_001008841.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMD00132265, SAMD00132291
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                BX883046.1         153809-153881
            74-343              BX883046.1         154085-154354
            344-619             BX883046.1         154525-154800
            620-895             BX883046.1         156050-156325
            896-1021            BX883046.1         156453-156578
            1022-1060           BX883046.1         156756-156794
            1061-1104           BX883046.1         156978-157021
            1105-1167           BX883046.1         157154-157216
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1167
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /note="RT1 class I, locus CE3"
                     /db_xref="GeneID:414793"
                     /db_xref="RGD:1598231"
     CDS             1..1059
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /note="MHC class I protein; MHC class I protein-like"
                     /codon_start=1
                     /product="RT1 class I, locus CE3 precursor"
                     /protein_id="NP_001008841.1"
                     /db_xref="GeneID:414793"
                     /db_xref="RGD:1598231"
                     /translation="MEVMAPRALLLLLAAALALAQTGIGSHSLRYFETALSRPGFGES
                     RFIIVGYVDDTQFMRFDSDAENPRMEPRARWMEREGPGYWEQNTRMAKRQEQWYRVNL
                     RTALRYYNQSEGGSHTFQRMYGCDVGSDGSLLRGYNQFAYDSLDYIALNEDLKTWTAA
                     DTTGRMTQSKWVQAGVADYYRAYLEGECVEWLRRYLELGKETLMRSDPPKAHVTLHPR
                     PEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPPG
                     KEQNYTCLVEHEGLPEPLTLRWAPSLSTDSNMETTVIYVVLGAISALAIIGALVPVVR
                     RRKRNTGGKGGVYAPAPG"
     exon            1..73
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            74..343
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            344..619
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            620..895
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1021
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1060
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1104
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1167
                     /gene="RT1-CE3"
                     /gene_synonym="RT1-C/E3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggaggtga tggcaccgcg ggcgctgctc ctgctgctgg cggccgccct ggccctggcc
       61 cagaccggca taggctcaca ctcgctgcgg tatttcgaaa ccgccttgtc ccggcccggc
      121 ttcggggagt cccggttcat tatcgtcggc tacgtggacg acacgcagtt catgcgcttc
      181 gacagcgacg cggagaatcc gaggatggag ccgcgggcgc ggtggatgga gcgggagggg
      241 ccggggtatt gggagcagaa cacacggatg gcgaagagac aagagcaatg gtaccgagtg
      301 aacctgagga ccgcgctccg ctactacaac cagagcgagg gcggctcgca caccttccag
      361 aggatgtacg gctgtgacgt ggggtcggac ggaagcctcc tccgcggata taatcagttc
      421 gcctacgaca gcctcgatta catcgccctg aacgaagacc tgaagacctg gacagcggcg
      481 gacacaacag gacggatgac acagagcaag tgggttcagg ctggtgttgc agactattac
      541 agagcctacc tggagggcga gtgcgtggag tggctccgca gatacctgga actcgggaag
      601 gagacgctga tgcgctcaga tcccccaaag gcacatgtga cccttcaccc cagacctgaa
      661 ggtgatgtca ccctgaggtg ctgggccctg ggcttctacc ctgctgacat caccctgacc
      721 tggcagttga atggggagga cctgacccag gacatggagc ttgtggagac caggcctgca
      781 ggggatggaa ccttccagaa gtgggcatct gtagtggtgc ctcctgggaa ggagcagaat
      841 tacacatgcc ttgtggaaca tgaggggctg cctgagcccc tcaccttgag atgggcgcct
      901 tctctatcca ctgactccaa catggaaacc actgtcattt atgtcgtcct tggagccatc
      961 tctgctctgg ccattattgg agctctggtg cctgttgtga ggaggaggaa gagaaacaca
     1021 ggtggaaaag gaggagtcta cgcccctgct ccaggttagt tgacagctcc cagagctctg
     1081 atgtgtctct cccagattgt aaagcatgaa gacagctgcc tggagtggac tgagtgacag
     1141 acgatgtgtt caggtctctc ctttgtc
//
