LOCUS       NM_001008836            1182 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RT1 class I, locus CE13 (RT1-CE13), mRNA.
ACCESSION   NM_001008836 XM_579231
VERSION     NM_001008836.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Dai,K.Z., Ryan,J.C., Naper,C. and Vaage,J.T.
  TITLE     Identification of MHC Class Ib Ligands for Stimulatory and
            Inhibitory Ly49 Receptors and Induction of Potent NK Cell
            Alloresponses in Rats
  JOURNAL   J Immunol 200 (8), 2847-2859 (2018)
   PUBMED   29531166
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Flor-de-Lima,F., Rocha,G., Proenca,E., Tafulo,S., Freitas,F. and
            Guimaraes,H.
  TITLE     The role of the human leukocyte antigen system in retinopathy of
            prematurity: a pilot study
  JOURNAL   Acta Paediatr 102 (12), 1150-1153 (2013)
   PUBMED   24033735
REFERENCE   3  (bases 1 to 1182)
  AUTHORS   Kang,E.H., Park,J.W., Park,C., Yu,H.G., Lee,E.B., Park,M.H. and
            Song,Y.W.
  TITLE     Genetic and non-genetic factors affecting the visual outcome of
            ocular Behcet's disease
  JOURNAL   Hum Immunol 74 (10), 1363-1367 (2013)
   PUBMED   23831258
REFERENCE   4  (bases 1 to 1182)
  AUTHORS   Cheung,Y.K., Cheng,S.H., Chan,E.J., Lo,S.V., Ng,M.H. and Kwan,P.
  TITLE     HLA-B alleles associated with severe cutaneous reactions to
            antiepileptic drugs in Han Chinese
  JOURNAL   Epilepsia 54 (7), 1307-1314 (2013)
   PUBMED   23692434
REFERENCE   5  (bases 1 to 1182)
  AUTHORS   Razumova,I.Iu., Vorob'eva,O.K., Safonova,T.N., Sheremet,N.L. and
            Eksarenko,O.V.
  TITLE     [Features of clinical manifestations of the globe, adnexal and
            orbital sarcoidosis]
  JOURNAL   Vestn Oftalmol 129 (2), 35-40 (2013)
   PUBMED   23808178
REFERENCE   6  (bases 1 to 1182)
  AUTHORS   Liu,W.H., Liu,C.D. and Zhang,J.Y.
  TITLE     [Association of HLA antigens with thyrotoxic periodic paralysis]
  JOURNAL   Zhonghua Nei Ke Za Zhi 30 (7), 395-398 (1991)
   PUBMED   1752149
REFERENCE   7  (bases 1 to 1182)
  AUTHORS   Hammer,R.E., Maika,S.D., Richardson,J.A., Tang,J.P. and Taurog,J.D.
  TITLE     Spontaneous inflammatory disease in transgenic rats expressing
            HLA-B27 and human beta 2m: an animal model of HLA-B27-associated
            human disorders
  JOURNAL   Cell 63 (5), 1099-1112 (1990)
   PUBMED   2257626
REFERENCE   8  (bases 1 to 1182)
  AUTHORS   Tandon,N., Mehra,N.K., Taneja,V., Vaidya,M.C. and Kochupillai,N.
  TITLE     HLA antigens in Asian Indian patients with Graves' disease
  JOURNAL   Clin Endocrinol (Oxf) 33 (1), 21-26 (1990)
   PUBMED   2401095
REFERENCE   9  (bases 1 to 1182)
  AUTHORS   Holland,G.N., Cornell,P.J., Park,M.S., Barbetti,A., Yuge,J.,
            Kreiger,A.E., Kaplan,H.J., Pepose,J.S., Heckenlively,J.R.,
            Culbertson,W.W. et al.
  TITLE     An association between acute retinal necrosis syndrome and HLA-DQw7
            and phenotype Bw62, DR4
  JOURNAL   Am J Ophthalmol 108 (4), 370-374 (1989)
   PUBMED   2801857
REFERENCE   10 (bases 1 to 1182)
  AUTHORS   Matsuki,K., Harada,T., Juji,T., Kanzaki,J., Koga,K. and Toriyama,M.
  TITLE     Human leukocyte antigen in childhood unilateral deafness
  JOURNAL   Arch Otolaryngol Head Neck Surg 115 (1), 46-47 (1989)
   PUBMED   2909230
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Mar 25, 2021 this sequence version replaced NM_001008836.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1650385.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN06621351,
                                           SAMN06680412 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               JAXUCZ010000020.1  3322658-3322799     c
            143-412             JAXUCZ010000020.1  3322186-3322455     c
            413-688             JAXUCZ010000020.1  3321724-3321999     c
            689-964             JAXUCZ010000020.1  3320401-3320676     c
            965-1081            JAXUCZ010000020.1  3320157-3320273     c
            1082-1114           JAXUCZ010000020.1  3319947-3319979     c
            1115-1162           JAXUCZ010000020.1  3319679-3319726     c
            1163-1182           JAXUCZ010000020.1  3319525-3319544     c
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1182
                     /gene="RT1-CE13"
                     /note="RT1 class I, locus CE13"
                     /db_xref="GeneID:414790"
                     /db_xref="RGD:1359196"
     exon            1..142
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1167
                     /gene="RT1-CE13"
                     /note="RT1 class I, CE13"
                     /codon_start=1
                     /product="RT1 class I, locus CE13 precursor"
                     /protein_id="NP_001008836.1"
                     /db_xref="GeneID:414790"
                     /db_xref="RGD:1359196"
                     /translation="MGAMAPRMLLLLLAAALAPTQTRAGSHSLLYFYTAMSRPGLGEP
                     WFMEVGYVDDTEFVRFDNDAENPRMEPRARWMEREGPEYWERNTRIAKENEQWSRMGL
                     RNLRGYYNQSEGGSHTVQRLYGCDVGSDGSLLRGYDQFAYDGRDYISLNEDLKTWAAA
                     DLAAQKTRNKWDQAGTAERRRAYLEGTCLEWLRRYLELGKETLLRSDPPEAHVTLHPR
                     PEGGVTLRCWALGFYPPGISLIWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLG
                     KEQNYTCHVEHEGLPEPLTLRWEPPSSTDFNMRIIAVLVVLGAVAIIGAVVAVMMKWR
                     RNTGGTGGDYTPAPGKASPNSCDLSLPLCKA"
     exon            143..412
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     exon            413..688
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     exon            689..964
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1081
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1114
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1162
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1182
                     /gene="RT1-CE13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggtcgccc cagacactgg ttgtaaagtc cacgcagccc gcgggactca accgcgttcc
       61 ggtactcaga tgggggcgat ggcaccgcgc atgctactcc tgctgctggc ggccgccctg
      121 gccccgaccc agacccgcgc gggctcacac tcgctgctgt atttctacac cgccatgtcc
      181 cggcccggcc tcggggagcc ctggttcatg gaagtcggct acgtggacga cacggagttc
      241 gtgcgcttcg acaacgacgc ggagaatccg aggatggagc cgcgggcgcg gtggatggag
      301 cgggaggggc cggagtattg ggagaggaac acacggatcg ccaaggaaaa cgagcagtgg
      361 tcccgaatgg gcctgaggaa cctgcgcggc tactacaacc agagcgaggg cggctctcac
      421 accgtccaga gattgtatgg ttgtgacgtg gggtcggacg ggagcctcct ccgcgggtat
      481 gatcagttcg cctacgatgg ccgcgattac atctccctga atgaagacct gaaaacgtgg
      541 gcggcggcag acctggcagc acagaagacc cggaacaagt gggatcaggc tggtactgca
      601 gagagacgca gggcctacct ggagggcacg tgcttggagt ggctccgcag atacctggag
      661 ctcgggaagg agacgctgct gcgctcagat cccccagagg cacatgtgac ccttcaccca
      721 agacctgaag gtggtgtcac cctgaggtgc tgggccctgg gcttctaccc tcctggtatc
      781 tccttgatct ggcagttgaa tggggaggac ctgacccagg acatggagct tgtggagacc
      841 aggcctgcag gggatggaac cttccagaag tgggcatctg tggtggtgcc tcttgggaag
      901 gaacagaatt acacatgcca tgtagagcat gaggggctgc ctgagcctct caccctgaga
      961 tgggagcctc cttcatccac agacttcaac atgagaatca ttgctgttct ggttgtcctt
     1021 ggagctgtgg ccatcattgg agctgtggtg gctgttatga tgaagtggag gagaaacaca
     1081 ggaggaacag gaggagacta cacccctgct ccaggtaagg ccagccccaa cagctgtgat
     1141 ttgtctctcc cactttgtaa agcatgaaga cagctgcctg ga
//
