LOCUS       NM_001008834            1139 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RT1 class I, locus CE11 (RT1-CE11), mRNA.
ACCESSION   NM_001008834 XM_579229
VERSION     NM_001008834.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Dai,K.Z., Ryan,J.C., Naper,C. and Vaage,J.T.
  TITLE     Identification of MHC Class Ib Ligands for Stimulatory and
            Inhibitory Ly49 Receptors and Induction of Potent NK Cell
            Alloresponses in Rats
  JOURNAL   J Immunol 200 (8), 2847-2859 (2018)
   PUBMED   29531166
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Mar 15, 2021 this sequence version replaced NM_001008834.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760494, SAMN06621351
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                JAXUCZ010000020.1  3363106-3363198     c
            94-363              JAXUCZ010000020.1  3362634-3362903     c
            364-639             JAXUCZ010000020.1  3362182-3362457     c
            640-915             JAXUCZ010000020.1  3360940-3361215     c
            916-1041            JAXUCZ010000020.1  3360687-3360812     c
            1042-1074           JAXUCZ010000020.1  3360477-3360509     c
            1075-1119           JAXUCZ010000020.1  3360225-3360269     c
            1120-1139           JAXUCZ010000020.1  3360071-3360090     c
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1139
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /note="RT1 class I, locus CE11"
                     /db_xref="GeneID:414791"
                     /db_xref="RGD:1359483"
     exon            1..93
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..1124
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /note="RT1 class I, CE11; H-2 class I histocompatibility
                     antigen, alpha chain-like; RT1 class I, CE10"
                     /codon_start=1
                     /product="RT1 class I, locus CE11 precursor"
                     /protein_id="NP_001008834.1"
                     /db_xref="GeneID:414791"
                     /db_xref="RGD:1359483"
                     /translation="MGSRAPHTLLLLLVAALAQTQPRAGSHSLWYFTSALSWPGLGEP
                     RFISVRYVDDTEFVRFDSGSENPRYEPRAPWMEREGPEYWEQQTRRAKGNQQTFQVNL
                     RTALRYYNQSEDRSHTIQRMYGCDMGSDRSLLRGYEQYAYDGRDYIALNEDLKTWTAA
                     DVAAQITRNKWDQAGVAERRRAYLEGTCVKWLRRYLEHGKETLLRSDPPKAHVTLHPR
                     PEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVALG
                     KEQKYTCLVEHEGLPEPLTQRWEAPPSTDSNMETNVIYVVVGALVITGAVIIGAVVAV
                     VRKRNTGGTGGDYAPAPGKANPNSSVSLPDCKA"
     exon            94..363
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            364..639
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            640..915
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1041
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1074
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1119
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1139
                     /gene="RT1-CE11"
                     /gene_synonym="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccaggtct gggatctcag atggggtcaa gggcacctca cactctgctc ctgctgctgg
       61 tggccgccct ggcccagacc cagccccgcg cgggctcgca ctcgctgtgg tatttcacct
      121 cggcgctgtc ctggcccggc ctcggggagc cccggttcat ctctgtccgc tatgtggacg
      181 acacggagtt cgtgcgcttc gacagcggct ctgagaatcc gagatacgag ccgcgggcgc
      241 cgtggatgga gcgggagggg ccggagtatt gggagcagca gacacggaga gccaagggca
      301 accagcagac tttccaagtg aacctgagga ccgcgctccg ctactacaac cagagcgagg
      361 accgctctca caccatccag aggatgtatg gctgtgacat ggggtcggac aggagcctcc
      421 tccgcgggta tgagcagtac gcctacgacg gccgcgatta tatcgccctg aacgaagacc
      481 tgaagacctg gacagcagca gacgtggctg cgcagatcac ccggaacaag tgggatcagg
      541 ctggtgttgc agagagacgc agggcctacc tggagggcac gtgcgtgaag tggctccgca
      601 gatacctgga gcacgggaag gagacgctgc tgcgctcaga tcccccaaag gcacatgtga
      661 cacttcaccc cagacctgaa ggtgatgtga ccctgaggtg ctgggccctg ggcttctacc
      721 ctgctgacat caccctgacc tggcagttga atggggagga cctgacccag gacatggagc
      781 ttgtggagac caggcctgca ggggatggaa ccttccagaa gtgggcatct gtggtggtgg
      841 ctcttgggaa ggagcagaag tacacatgcc ttgtggagca tgaggggctg cctgagccgc
      901 ttacccagag atgggaggct cctccatcca ctgactccaa catggaaacc aatgtcattt
      961 atgttgtcgt tggagccctg gtcatcactg gagctgtgat cattggagct gtggtggctg
     1021 ttgtgaggaa gagaaacaca ggaggaacag gaggagacta cgcccctgct ccaggcaagg
     1081 ccaaccccaa cagctctgtg tctctcccag attgtaaagc atgaagacag ctgcatgga
//
