LOCUS       NM_001008833            1114 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RT1 class I, locus CE10 (RT1-CE10), mRNA.
ACCESSION   NM_001008833 XM_579228
VERSION     NM_001008833.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Dai,K.Z., Ryan,J.C., Naper,C. and Vaage,J.T.
  TITLE     Identification of MHC Class Ib Ligands for Stimulatory and
            Inhibitory Ly49 Receptors and Induction of Potent NK Cell
            Alloresponses in Rats
  JOURNAL   J Immunol 200 (8), 2847-2859 (2018)
   PUBMED   29531166
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001008833.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.56747.1,
                                           SRR26643292.62759.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN11044071,
                                           SAMN12840113 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                JAXUCZ010000020.1  3384907-3384979     c
            74-343              JAXUCZ010000020.1  3384434-3384703     c
            344-619             JAXUCZ010000020.1  3383977-3384252     c
            620-895             JAXUCZ010000020.1  3382644-3382919     c
            896-1033            JAXUCZ010000020.1  3382412-3382549     c
            1034-1066           JAXUCZ010000020.1  3382202-3382234     c
            1067-1114           JAXUCZ010000020.1  3381962-3382009     c
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1114
                     /gene="RT1-CE10"
                     /note="RT1 class I, locus CE10"
                     /db_xref="GeneID:414792"
                     /db_xref="RGD:1359292"
     CDS             1..1083
                     /gene="RT1-CE10"
                     /note="RT1 class I, CE10"
                     /codon_start=1
                     /product="RT1 class I, locus CE10 precursor"
                     /protein_id="NP_001008833.1"
                     /db_xref="GeneID:414792"
                     /db_xref="RGD:1359292"
                     /translation="MEAMARPTLLLLLAAALAPTKTRAGSHWMRYFHTAVSRPGLGEP
                     RYISVGYVDDTQFVRFDSDAENPRYEPRARWMEREGPEYWERNTRIVKGKEQIFRDNL
                     RTLLGYYNQSEGGSHTLQLMYGCDVGSDWSLLRGYEQHAYDGRDYIALNEDLKTWAAA
                     DFEAQKTRSKWEREGVAERSRAYLEGECVKWLRRHLEHGKEALLRLDPPEAHVTLHPR
                     PEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMEFVETRPAGDGTFQKWASVVVPLG
                     KEQNYTCLVEHEGLPEPLTQRWEPSPSTNTNMGIDVTSVFLGPLAVFVVLAIIGAAVA
                     VVRRRRRRNTGGEGGDYTPAPGRDSS"
     exon            1..73
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            74..343
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            344..619
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            620..895
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1033
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1066
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1114
                     /gene="RT1-CE10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggaggcga tggcacggcc cacgctgctc ctgctgctgg ccgccgccct ggccccgacc
       61 aagacccgcg cgggctcaca ctggatgcgg tatttccaca ccgccgtgtc ccggccgggc
      121 ctcggggagc cccggtacat ctctgtcggc tacgtggacg acacgcagtt cgtgcgcttc
      181 gacagcgacg cggagaatcc aagatacgag ccgcgggcgc ggtggatgga acgggagggg
      241 ccggagtatt gggagcggaa cacacggatc gtcaagggaa aggagcagat tttccgagac
      301 aacctgagga ccctgcttgg ctactacaac cagagcgagg gcggctctca cacactccag
      361 ttgatgtatg gctgtgacgt ggggtcggac tggagcctcc tccgcgggta tgagcagcac
      421 gcctacgacg gccgcgatta catcgccctg aacgaagacc tgaaaacgtg ggcggcggcg
      481 gactttgagg cacagaagac ccggagcaag tgggagaggg aaggtgttgc agagagaagc
      541 agggcctacc tggagggcga gtgtgtgaag tggctcagga gacacctgga gcacgggaag
      601 gaggcgctgc tgcgcttaga tcccccagag gcacatgtga cccttcaccc cagacctgaa
      661 ggtgatgtca ccctgaggtg ctgggccctg ggcttctacc ctgctgacat cacattgacc
      721 tggcagttga atggggagga cctaacccag gacatggagt ttgtggagac caggcctgca
      781 ggggatggaa ccttccagaa gtgggcatct gtggtggtgc ctcttgggaa ggagcagaat
      841 tacacatgcc ttgtggagca tgaggggctg cctgagcctc ttacccagag atgggagcct
      901 tctccatcca ccaacaccaa catgggaatc gatgttactt ctgtttttct tggacctttg
      961 gctgtctttg tagttttggc catcattgga gctgcggtgg ctgttgtgag gaggaggagg
     1021 aggagaaaca caggtgggga aggaggagac tacacccctg ctccaggcag ggacagctcc
     1081 tagagctctg atgtgtccct cccagattgt aaag
//
