LOCUS       NM_199379               1306 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 6 open reading frame
            89 (C20h6orf89), mRNA.
ACCESSION   NM_199379 XM_215353
VERSION     NM_199379.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1306)
  AUTHORS   Lalioti,V.S., Vergarajauregui,S., Villasante,A., Pulido,D. and
            Sandoval,I.V.
  TITLE     C6orf89 encodes three distinct HDAC enhancers that function in the
            nucleolus, the golgi and the midbody
  JOURNAL   J Cell Physiol 228 (9), 1907-1921 (2013)
   PUBMED   23460338
REFERENCE   2  (bases 1 to 1306)
  AUTHORS   Liu,H.J., Tan,Y.R., Li,M.L., Liu,C., Xiang,Y. and Qin,X.Q.
  TITLE     Cloning of a novel protein interacting with BRS-3 and its effects
            in wound repair of bronchial epithelial cells
  JOURNAL   PLoS One 6 (8), e23072 (2011)
   PUBMED   21857995
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1 and BC062242.1.
            
            On Mar 16, 2021 this sequence version replaced NM_199379.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062242.1, SRR22582424.671946.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                JAXUCZ010000020.1  7324161-7324213
            54-1306             BC062242.1         5-1257
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1306
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /note="similar to human chromosome 6 open reading frame
                     89"
                     /db_xref="GeneID:294311"
                     /db_xref="RGD:735065"
     exon            1..77
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            78..169
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            170..377
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     CDS             189..1235
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /note="uncharacterized protein C6orf89 homolog"
                     /codon_start=1
                     /product="bombesin receptor-activated protein C6orf89
                     homolog"
                     /protein_id="NP_955411.1"
                     /db_xref="GeneID:294311"
                     /db_xref="RGD:735065"
                     /translation="MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLE
                     KNEPQRGPPQYPLLIAMYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGAHTWRSLIH
                     HIRLVSLPITKKYMPENKGVPLQGREEDKPFPDFDPWSSNNCEQNESEPIPANCTVCA
                     QILPLKVTLPEDTPKNFERLRPLVIKTGQPLLSAEIQSFSCQYPEVTEGFTEGVLTKW
                     WRCFPERWFPFPYPWRRPLNRSQILRELFPVFTQLPFPKDASLNKCFLIQPEPVVGSK
                     MHEVHDLFTIGSGEAMLQLIPPFQCRRHCQSVAMPIESGDIGYAGAAHWKVYIVARGV
                     QPLVICDGTTLSEL"
     exon            378..591
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            592..746
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            747..886
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            887..1016
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1140
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1306
                     /gene="C20h6orf89"
                     /gene_synonym="RGD735065"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgttggc caatcctcct cgcccggcgg ctggtgtccc cgaggcggga ggagcccgag
       61 agggcgcggg cccgcatggt taaaccactg ttaaggaatc gaactcagtc ttctgaactt
      121 ccctccgagg caaagctcct ctctgccagg ctggaccctc tttctggagg gatttcattt
      181 tggaagacat ggatcttgct gctaatgaga tcagcatcta tgacaaactt tcagagactg
      241 ttgatttggt gagacagaca ggccatcagt gtggaatgtc cgagaaggcg attgaaaagt
      301 ttatcagaca gctactcgaa aagaatgaac ctcaaagggg accaccccag taccctctcc
      361 ttatagccat gtataaggtc ctcctaactc tgggattaat cttgttcact gcctactttg
      421 taattcagcc ttttagctca ttagcacccg agccagtgct ttctggagct cacacctggc
      481 gctcactcat tcatcacatt cggctggtgt ccttgcccat taccaagaag tacatgccag
      541 agaataaggg cgttcctctg caaggaagag aggaagacaa acccttccca gactttgacc
      601 cctggtcatc aaataattgt gaacagaacg agtcagagcc cattcctgcc aactgcactg
      661 tctgcgccca gattctaccc ctcaaggtaa cgctcccaga agacactccc aagaactttg
      721 agagactccg tcctctggtg atcaagacag gacagcctct gttgtctgca gagattcaga
      781 gcttctcttg tcagtaccct gaagtcacag agggcttcac cgagggcgtt ctcaccaagt
      841 ggtggcgctg ctttcctgag aggtggttcc cgtttcctta cccatggaga agacctctaa
      901 acagatcaca gattttacgg gaacttttcc cagtttttac ccaacttcca tttccaaaag
      961 atgcctcctt aaacaagtgc ttcctgatcc aaccggaacc tgtggtgggt agcaagatgc
     1021 atgaggtgca tgacctgttt accattggca gcggggaagc catgttgcag ctcatccctc
     1081 ccttccagtg ccgaagacac tgtcagtctg tggccatgcc gatagagtct ggggacattg
     1141 gctatgctgg tgctgcccac tggaaggtct acatcgtagc cagaggggtc cagcctttgg
     1201 tcatctgtga tggaaccact ctctcagaac tataggaaac aactgcttgg agacctgaga
     1261 cctaggctgg aaagagtgcg gagcggggaa taaaacactg aaacac
//
