LOCUS       XM_039100451            1165 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to prohibitin (RGD1566197),
            mRNA.
ACCESSION   XM_039100451
VERSION     XM_039100451.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100451.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1165
                     /gene="RGD1566197"
                     /note="similar to prohibitin; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:302688"
                     /db_xref="RGD:1566197"
     CDS             55..897
                     /gene="RGD1566197"
                     /codon_start=1
                     /product="prohibitin-like"
                     /protein_id="XP_038956379.1"
                     /db_xref="GeneID:302688"
                     /db_xref="RGD:1566197"
                     /translation="MAAKVFESIRTFGLVLAVAGGVENSALYNVDAGHRAVIFDQFPS
                     VQDIVVREGTHFLIPWVQKPIIFDCRSQPRNVPVITGSKDLQNVNITQRILFQPVVSQ
                     LPHIYTSIGKDYDEQVLSSITTESLKLMVARFDAGELVTQRELVSRQVSDDLIERAAT
                     FGLILDDMSLTHLTFGKEFTEAVEAKQVAQQEAERARFAVEKAEQQQKVAIISAEVDS
                     KIAELIANSLATAGDGLMELRKLEAAEDIAYQHSSSRNITYLPVRAPPASPVRPTRPW
                     PPSH"
ORIGIN      
        1 ttcatgtgga ggtcagagtg gaaacacgta tgagtggaag caacagaagg agtgatggct
       61 gccaaagtgt ttgagtccat cagaacgttt ggcctggtgt tagcagttgc aggaggtgtg
      121 gagaactctg ctttatataa cgtggatgct gggcacagag ctgtcatctt tgatcaattc
      181 cctagcgtac aggatattgt ggtaagggaa gggactcact ttctcatccc ttgggtacag
      241 aagccaatta tttttgactg ccgctctcaa ccacggaatg tgccggtcat cactggtagc
      301 aaagacttgc agaatgtcaa catcacacaa cgcatcctct tccagccagt ggtcagccag
      361 cttcctcata tctacaccag cattggcaag gactatgatg agcaggtgct gtcctctatc
      421 accacagaga gcctcaagtt gatggtggct cgattcgatg ctggagaatt ggttacccag
      481 cgagagctgg tctccaggca ggtgagtgat gacctcatag agcgagcagc aacatttggg
      541 ctcatcctgg atgacatgtc cctgacacat ctgaccttcg gaaaggagtt cacagaggcg
      601 gtggaagcca aacaggtggc tcaacaggaa gcagagagag ccagatttgc agtggaaaag
      661 gctgagcagc agcagaaggt ggccatcatt tctgctgagg ttgactccaa aatagctgag
      721 ctgattgcca actcgctggc cacagcaggt gatggcctaa tggagctgcg aaagctggaa
      781 gctgctgagg acatcgctta ccagcactcc agctctcgga acatcaccta cctgccagtc
      841 cgtgctcctc cagcttctcc agtgaggcca accaggccat ggcctccatc acactgaatg
      901 acgccttcct tctgccccac tccagaaatc actgtgaaat ttaatgattg gctcaacgtg
      961 aaggaaataa aagtaaaatc acttcagatc tcttttaaaa aaaagaatca ggtgtaattc
     1021 tgataggtct gtttttgtat gttaccagtt ctttttccct tgttgctttt aatattcttg
     1081 gttttgcaga ttttgtgttt tgattattaa gtggtgggag gatttctttt ctggtctagt
     1141 ctaattggtg ttctataagc ttctc
//
