LOCUS       XM_039100397            1540 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Testis derived transcript
            (RGD1566184), transcript variant X1, mRNA.
ACCESSION   XM_039100397
VERSION     XM_039100397.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100397.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1540
                     /gene="RGD1566184"
                     /note="similar to Testis derived transcript; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 47 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:298331"
                     /db_xref="RGD:1566184"
     CDS             195..1430
                     /gene="RGD1566184"
                     /codon_start=1
                     /product="testin-like"
                     /protein_id="XP_038956325.1"
                     /db_xref="GeneID:298331"
                     /db_xref="RGD:1566184"
                     /translation="MMDLGPEQIFGAPCRKCKEKCEGFELHFWKKTCRNCKCGQEEHG
                     ILLSTEEDRKVGRIIEDGKDTNQIAKLKADEIPMDKTSETVLNKPEPEKKDDFTKTVS
                     YEWVPSVQNKALTRQYMQMLPKEKQPVSGSEGAQYRKKQLAKQLPAHDQDPNKCHELS
                     RKEAKEMRQFVKKYKNEALGVGDVRLPSEMNVQHYKGHNPATDRNTPTAVDFKDTSME
                     PKKPQYSCYSCKHAVKEGNPAIFAERAGYDKLWHPACFICTICGEILVDMIYFWKNGK
                     LYCGRHYCDSEKPRCAGCDELIFSNEYTQAENKNWHLIHFCCFHCHNVLAGKIYVMVG
                     SKPVCKSCYMKIHAVVCQGCHNAIDPEEQRVIYQNFSWHASTACFLCSCCSKCLLGKK
                     FIRVEGMIFCSIECKNMMS"
ORIGIN      
        1 ctaaaagggc tatataggtt tgacacctcc ttagcagatt cagtaggtct gaagaacttt
       61 gcttaacaag tcatatgtct caagactcca tcagttcttg aggatatgtg tgacaccctt
      121 gttctaaagt gaatcactag ctgcctaaag ctcctgctgc tatgactatc tgatgtaatg
      181 gaccacactc tggaatgatg gacttaggtc ctgagcaaat atttggagcc ccctgtcgaa
      241 aatgtaaaga gaaatgtgaa ggatttgaac tacacttctg gaagaaaacg tgtcgtaact
      301 gcaaatgtgg gcaagaagag catggcatac tcctgagcac tgaggaggac aggaaagtgg
      361 ggagaatcat tgaagatggc aaggacacca accaaattgc caagctgaag gcagatgaaa
      421 ttcccatgga caaaaccagt gaaacagtat tgaacaaacc agagcctgaa aagaaggatg
      481 atttcactaa aactgttagc tatgagtggg ttccctctgt ccagaacaag gcactgacta
      541 ggcagtatat gcagatgctg cctaaggaga agcagccagt gtcaggttca gagggagcac
      601 agtaccggaa gaagcagctg gccaagcagc tccctgcaca tgaccaggac cctaataagt
      661 gccatgagtt gtctcgaaaa gaagctaagg agatgaggca gtttgtgaag aaatataaga
      721 atgaagctct gggagtgggt gacgtgaggc ttccctctga gatgaatgtt caacattaca
      781 aggggcacaa ccctgctaca gacagaaaca ccccaacagc agtggatttc aaagacacat
      841 ctatggagcc taagaagcct caatattcct gttattcctg caaacacgcc gtgaaggaag
      901 gaaacccagc catctttgct gaaagggctg gctatgataa actctggcac ccggcttgct
      961 ttatttgcac catctgtggt gaaatcctgg tagacatgat ttacttctgg aagaatggga
     1021 agctgtattg tggcagacat tactgtgaca gtgagaagcc ccgttgtgct ggctgtgatg
     1081 agctgatatt cagcaatgaa tatacccaag cagaaaacaa gaattggcat ttgatacact
     1141 tttgctgctt tcactgccac aatgtcctgg caggaaaaat atatgtgatg gttggatcaa
     1201 aacctgtgtg caagtcctgt tacatgaaga tccatgctgt ggtgtgtcaa ggatgccaca
     1261 atgccataga cccagaagag cagagagtaa tctaccaaaa cttcagctgg catgcatcca
     1321 cggcatgctt cctgtgctcc tgttgcagca agtgtcttct tgggaagaag ttcatacgtg
     1381 tagaagggat gattttctgt tccatagagt gtaagaatat gatgtcctaa gaggagtgta
     1441 ccaagcagta tggagtgata actttccaca gtggcctgcg tttcttgata aatttcaact
     1501 tgaaaaaaaa ggaaaaataa acgtaaacct acatagcaaa
//
