LOCUS       NM_001402486            6650 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus pyridoxal kinase like 1 (Pdxkl1), mRNA.
ACCESSION   NM_001402486 XM_039099173
VERSION     NM_001402486.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6650)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Mar 15, 2022 this sequence version replaced XM_039099173.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1462433.1,
                                           SRR26360172.2174544.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               JAXUCZ010000020.1  10192094-10192271   c
            179-233             JAXUCZ010000020.1  10184344-10184398   c
            234-338             JAXUCZ010000020.1  10182335-10182439   c
            339-422             JAXUCZ010000020.1  10179962-10180045   c
            423-469             JAXUCZ010000020.1  10178267-10178313   c
            470-555             JAXUCZ010000020.1  10175588-10175673   c
            556-601             JAXUCZ010000020.1  10173909-10173954   c
            602-713             JAXUCZ010000020.1  10172326-10172437   c
            714-850             JAXUCZ010000020.1  10171393-10171529   c
            851-917             JAXUCZ010000020.1  10168592-10168658   c
            918-6650            JAXUCZ010000020.1  10162634-10168366   c
FEATURES             Location/Qualifiers
     source          1..6650
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..6650
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /note="pyridoxal kinase like 1"
                     /db_xref="GeneID:361819"
                     /db_xref="RGD:1566085"
     exon            1..178
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..1030
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /note="pyridoxal kinase-like"
                     /codon_start=1
                     /product="similar to pyridoxal (pyridoxine, vitamin B6)
                     kinase"
                     /protein_id="NP_001389415.1"
                     /db_xref="GeneID:361819"
                     /db_xref="RGD:1566085"
                     /translation="MEGECRVLSIQSHVVRGYVGNRVAMFPLQVLGFEVDAVNSVQFS
                     NHAGYAHWKGQVLTSQELHALYEGLKANNVNKYDYVLTGYTRDKSFLTMVVDIVKELK
                     QQNSKLMYVCDPVMGDKRNGEGSMYVPQDLLPVYREKVVPMADIITPNQFEAELLSGR
                     KIHSQEEAFAVMDVLHRMGPDTVVITSSDLPSPKGSDYLMALGSQRMRKPDGSTVTQR
                     IRMEMRKLDAVFVGTGDLFAAMLLAWTHKHPDNLKVACEKTVSAMQHVLQRTIRCAKA
                     EAGEGQKPSPAQLELRMVQSRKDIEDPEIVVQATVL"
     exon            179..233
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            234..338
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            339..422
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            423..469
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            470..555
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            556..601
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            602..713
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            714..850
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            851..917
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
     exon            918..6650
                     /gene="Pdxkl1"
                     /gene_synonym="RGD1566085"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagaaccg gcgagcggat cctgagccag tgccctggac agccggagcc gtaactccaa
       61 ctgtgtcccc agcaaccacg gccagcccgg catggagggc gagtgccggg tgctctctat
      121 tcagagccat gtagtccgtg gctacgtggg caaccgggtg gccatgttcc ctctgcaggt
      181 tttgggattt gaggttgatg ccgtgaactc tgtgcagttt tcaaaccatg caggctatgc
      241 ccactggaag ggccaggtgc tgacgtccca ggagctgcat gcgctgtacg aaggtctcaa
      301 ggcaaacaac gtcaacaagt atgactacgt gctcactggt tatacaagag acaagtcctt
      361 cctgaccatg gtggtggaca tcgtgaagga gctgaagcaa cagaactcca agctcatgta
      421 cgtgtgtgac cctgtgatgg gcgacaagag gaatggagaa ggctccatgt acgttcccca
      481 ggacctgctt cccgtgtaca gggagaaagt ggtacccatg gccgacatca tcactcccaa
      541 ccagtttgag gctgagttgc tgagtggcag aaaaatccac agccaagaag aagcatttgc
      601 ggtgatggat gtgttgcacc gcatgggtcc tgacactgtg gtcatcacca gctctgacct
      661 gccctcccca aagggcagcg actacctgat ggcgctggga agccagagga tgaggaagcc
      721 tgacggctcc acagtgaccc agcgcatccg gatggagatg cgcaagttgg acgccgtctt
      781 cgtgggcacc ggggacctct tcgctgccat gcttctggcg tggacacaca aacacccaga
      841 caacctcaag gtggcctgtg agaaaacggt gtctgccatg cagcatgtcc tgcagaggac
      901 catccggtgt gcaaaagccg aagcaggaga aggacagaag cctagcccgg ctcagctgga
      961 gctgagaatg gtgcagagca ggaaggacat cgaggacccc gagatcgtcg tgcaggccac
     1021 ggtgctgtga gggccgtgca cactcaccct gacacacacc gagctgaggt gtccgtctcc
     1081 atccctgtga aaagctgtaa agtctgcctt agagccatga tgaaacttga cattgtgttc
     1141 ctccctgaga gtcgggtctc agaccgtctc tgtcctgaaa atgtgccaac gcgctatttt
     1201 tttaaaaaat gacaaaggtg tcatcgaaat gtgtgattca gacccatggc cccttcccta
     1261 aaggctctgg gcctctgact gcctcatgtt gactcatggg tatgtggaag gtaggtggag
     1321 gaggggagcc tgctgcctct ggacccttct gtaggctact gactgccatt gcccttgtgg
     1381 atacacaatc cctgattgtg caaagactct gcctgtgtgg gcactgactc taaaattggg
     1441 ttaggtcttc accgttggca tcgggagaat taggccaaat atcttcatcg ccattctggt
     1501 ctttcccttg ttcctgcatt agtttctctg tgtctctgct gcccttcggg tgtccccgaa
     1561 tgtcacttat gcagctgtgg gactgtgtgg gaagctttca tggccccatg tgtggctacg
     1621 taggctcaca ggcacgtggt gactgtgaca gggacctttt aatgtagcag aacattcccg
     1681 gggatctgcg agcttcccag gtatctgcag ggcctcctgg aactcgggag caaactctag
     1741 gaaacggacc aacatggggt tgagccgctg agccccgggc ggcttggagg ttgagggaag
     1801 tttgccacac tgggctcttg tgggcactca cccagccctg caggactgtc agctggcagt
     1861 gtccctgcca catgctgctg gggacagtgc attgttgcac aggggtttgc acagacaggg
     1921 aaggagaggc agagatggcc cctgcccctg gtggcatagt taaaatctga tctccctccc
     1981 tccccctcac tcccatttct gtgccccgct tatgctgagg gccaagaggg ccttatgtga
     2041 agccagctgg ctccctgcct ccttggaggt tctgctcctg ttcagagcat agggtattgt
     2101 gcgtgcagag gcagctcttg gttcccagac gtagactgtg acattttctg tttcctcgtg
     2161 ctcaagggtg aatttcctgg ctctattccc tggagtatag ggtccctagt catggctgtg
     2221 actttgagca ttccatccat gactttcatg atctttcggt ccacacccac atccctgcac
     2281 ctcagccctt gagacatgta tcttctggga agccacagcc taaggagaac tgggcggcag
     2341 gaggaggtgg agaggacatt gtgccctccc ctagaagcat agggtctcat ggacctctga
     2401 gtgtcaggct gccacacccc ttcccctatt aaagtgcccc aggtagagga gatgctggtc
     2461 caggtggacc tgaaccagct ccataatgtg agctccccat gtttctagtc ccaggctgtg
     2521 agacggatca gcaggtgaag gtgcctgtgg atacaataag ccttacaact ttgaaggtag
     2581 cagggaactg gtttctataa atttctctct ctctctctct ctctctctct ctctctctct
     2641 ctgacacaca cgtattttaa atgtaatttt attcaattaa tcaatttaat tcaaatgtga
     2701 ttgaaaaaat gaccttgagc aatagtaccc cagtactgcc atgtgtccaa ggctggttcc
     2761 aaggtgactc ctctgatccc caagagaaag gaaaccagag gcagtatctt aaacgtgagg
     2821 accagcctca ttgcctcaag gcttaacaga aaaagcccat cactgcctca cagagagcag
     2881 agagcaccac cttgccagca tgtcaggaaa cttccctttt cttcgcaaat gttgagatgg
     2941 gactggaggt ggctcagctg gcaaagtggt tgctacccaa acacaaggac ctgagttcaa
     3001 accccaccag gtgtggctgt gcggggcagt agggaggagg aaacaggagt cacctgccag
     3061 cgagtgcatt cgtattggtg atctgagttt cgatgaggag agacctagtc tcaagacaat
     3121 aagaggagag caatttgaaa aataaggcat cacacaggtt aagggcaggc atggggctgg
     3181 ggatagcctg tgtgagacac agtggaacaa ctgctccatt ggaacaattg ttcctctggg
     3241 acaatggaac tctgtgtggc agttttatgt gtaccggtct aaatgtgcaa ccacaccagg
     3301 aaaagcttag cccttttgct gtagcccagc cgatgtgggt ggggaggacc ctttcttgct
     3361 aacatagccc ggtgagttct atgcacccac cccctatgag aatttcctct aaaaccctgg
     3421 actttggtta agtctcactt ttcctatctg ctttggagat aacaggacag atacaggctt
     3481 tgagtggcaa aggcatgtga caaaaggaag atactcatgc tttgaacctg agcacaggcc
     3541 ctgggcagaa gtaaggctcc aatgtactgt ccattgctgt gccagcaaac aggcacaggg
     3601 tctggctccc tcgtatccaa atcacaactg gctttgactt tccctttcca gagcttagta
     3661 atgaaataac gtgttgcccg ctccctgttg ggggactttg attttgtgtc aaaacatctc
     3721 cttcaacctg ctggacaggg attcccacat atgattctat ttacatcact gcctgctcct
     3781 ggtaggtatt cctgggcctc ttactttcac agtatattcg tgattgtaaa aatgacactg
     3841 tccttttctt taacttgcga gagcccactt tgattgattt tgcagtggga gaggtctggg
     3901 ctttgctgtg ctgtagtggg aatttgaaag gaggggactg tgtgccccac aggctgttag
     3961 aggtcaggct gtctcatgtc cttgttgagg atgcagggcc cctggaagga ggggggttgg
     4021 ccacagcatt gctgaggccc tcgctgtgtt ccagggcagc tccaggacac cgttcccagc
     4081 tcccattgct tcagacctta cactgtagag tgaaggagaa gagaagtgaa tgtattttgt
     4141 ctttgatctc tgtttctttg cggccctttg ggggattact cacttgtggt atcagtccat
     4201 atttacgtag ttctcaggtg tccagtgacc acaggctgaa ctaaccacgg ctggcactgc
     4261 ccctccatga gcctttcttc tggggcaggg tatacacctg gaccagaggg cactggagtt
     4321 tgagtggaca ggtacagacc caggctttgt ggatgtgccc tctagtgggt gccacagccc
     4381 agtgccccct tttatcgctg ccaactggag cacctccctt ccaggcatcc acgcagctac
     4441 ctgcactgag agcctttgga aattcggtct gcccatgtga gggagggtgc tgaccacagg
     4501 agccaccagt ggatgctaag aaagggcgtc cccacccaca aggggcagtt ctgggaggtc
     4561 aggtgcagtg taagggtaga atggaattgt ggattctgta gggaaagcag agttagtaaa
     4621 ggcttgaatt tgggcctagc aggtctgact gaatgtcact ccccggtccc ctgcatgttg
     4681 gagaggcgtc ctggaatgga ggtgcagctg gacatgcata tgccagtccc gttgcttttc
     4741 cacactttct gtgacagctg tagatggctg gcaggttcca gtcctgtgga agcagagaag
     4801 agaggtttct cctctcttcc agttgtgttc tcagcatcga ccagtaggtg gcgcagtgga
     4861 gctggagcac tgtcaggccc aggcagatgc tggtaccagc agattcaaca ggaatcatcc
     4921 tgctagattt ggctggtttt tactgtgtaa aacttcatgt taggactcaa atttggcatt
     4981 gtgtaacacc tcacagcaag tgggagctca gtgtgtcccc agtcctgcct gacatcccag
     5041 gaagccatta cttggtcagc atggccagaa atgacagttt atgaatatca gtgcattttg
     5101 ggatgtgtgt ttctttgttg agtctggttt tttcttgttg cagaaaagac aatgattaat
     5161 ttagactaat gtcttatatg tcatagtttc acatccctgc actctagtgg gtttagttgc
     5221 ttaaaaccag aattgaatga gtaattttaa tatttaaatt taacagtata taaaactttt
     5281 gtacttggac tttttttttt ttttgcctga tatggtggca catacctaca gtctggtacc
     5341 atagaggctg aggcaggagg ctagtgactt taaagtcaca ctatgctatg taggaagact
     5401 ctgtctttaa gcacatacaa ggttatccct aagttgtttt cttttttaat ttccggtgga
     5461 ataaacacaa tttaaagatt acccactatt gagccaggca gagaatgtcc tcagagccgg
     5521 agtctgcatc tcccttgtat tcccttccct gcctgtgtca gctcccctgt gccagcatct
     5581 cctcattcct tccctgaccc cctgcccagc agtttctggt ctttgtgcaa taagatacac
     5641 attccaggtg gaaaaggtct ccctgaggcc atgggaactc caccctgccc tggtcatctc
     5701 ttgaatagcc agctagggct gcctctgccc tgaagctaca gatgtgtgga aacaggagag
     5761 agcttgccac tcagacttcc atgtttggag gctcccagaa ggctttgggg tataaccatg
     5821 gccatacctc actgcccatc ctatagagcc aggaggccca aaaaggcagg ctgagatgtt
     5881 ggataaaacc atgtctgcac ctcactgcct tgcagggcta tgcacattcc cacatgcagg
     5941 caggtggagg tgcgttcaac cttagtgtga actgggctgg tgttctggaa gcctcagagc
     6001 tacactgtca cagaggaagt ggttcatgct tgacaggagg gtgtgtcctg ggggtgacag
     6061 gagacagtag aggatgcaga ggcttagcac gtccttcccc ctcataactc aaggagcagg
     6121 aaggcaaaag caacgttccc tcaaagctca ggcccaagtg attcccacaa aacacccaag
     6181 accttttttt tttttttctt tttggatgat gggtgtgtga atggtgtgaa tggtgaattc
     6241 ttcatgaata aagctcttga aaaatgtggc atgggcgaca tcacgaatgc tctagttcat
     6301 agctgcccac tcttgacact atgtcacaat ttcaccatat gtttcaaacc tggaccaatt
     6361 gtcaaatggg ctgcactgtg gggctggccc gatcctgcta gtccttccca gagacctcac
     6421 ctctccggag gcccctggtc tttagagcaa agcacagttg accccacaat ccctgctgtg
     6481 cagaaggggt gtgctctgga ctcaggtggt ctccagacca acctcccctc ccccagccct
     6541 gtgtgctgtc ccctgtcagt gtttgtggac atgagcactg tgtagctgtg tctgttctgt
     6601 gctggtctgt tgacttctat gactacccac aaataaatat tttcactgca
//
