LOCUS       XM_039100255             961 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to protein tyrosine
            phosphatase 4a1 (RGD1566035), mRNA.
ACCESSION   XM_039100255
VERSION     XM_039100255.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..961
                     /gene="RGD1566035"
                     /note="similar to protein tyrosine phosphatase 4a1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 20 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:363438"
                     /db_xref="RGD:1566035"
     CDS             352..873
                     /gene="RGD1566035"
                     /codon_start=1
                     /product="protein tyrosine phosphatase type IVA 1-like"
                     /protein_id="XP_038956183.1"
                     /db_xref="GeneID:363438"
                     /db_xref="RGD:1566035"
                     /translation="MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTT
                     IVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAV
                     RCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRF
                     KDSNSHRNNCCIQ"
ORIGIN      
        1 gaagccccca taagagtgga tagcctggac acagtcgtgt tgaattgaaa tctgcagagc
       61 atttcacaag agctcagacc tggacggggc aaacctcagt tgctcctcct tcgtatcgcc
      121 tcagtattca ctgcttcttg tgagcaatat tccattgccc gtttctcccg actcatactc
      181 aaagcaccga gaatttcaag tggagtatac tgaatattga agtagacttc aggttgcttt
      241 ttggttttgt ttggttttca gtttttgttt ttgtttggaa tcatttctgt attcattttt
      301 ttaattcttt cataacccta ttgggtgctt ttttttttat actaaattaa catggctcga
      361 atgaactgcc ctgctcctgt ggaagtcaca tacaagaaca tgagatttct tattacacac
      421 aatccaacca atgcgacctt aaacaaattt atagaggaac ttaagaagta tggagttacc
      481 acaatagtaa gagtatgtaa agcaactcac gacactactc ttgtggagaa agaaagcatt
      541 catgttcttg agtggcattt tgatgatggt gcaccaccat ccaaccagat tgttgatgac
      601 tggttaagtc ttgtgaagat taagtttcct gaagaacctg gttgccgcat tgctgtccgt
      661 tgtgtcgcag gccttggcag agctccgggg cttgttgccc tagcattaat tgaaggtgga
      721 atgaactatg aagatgcagt acaattcata agacaaaagc ggcgtggagc ttttaacggc
      781 cagcaacgtt tgcctctgga gaagtaccat cctaaaatgt ggctccgctt caaggattcc
      841 aacagtcata gaaacaactg ttgtattcaa taaaactagg gtgcctaatg ccattgcctt
      901 ggaagaggaa cttcagatgg gacctgattt gttacgtacc caatgtgtcc acttacctgt
      961 g
//
