LOCUS       XM_039089996            2126 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to paired immunoglobin-like
            type 2 receptor beta (RGD1566006), transcript variant X3, mRNA.
ACCESSION   XM_039089996
VERSION     XM_039089996.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089996.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2126
                     /gene="RGD1566006"
                     /note="similar to paired immunoglobin-like type 2 receptor
                     beta; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 8 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:501828"
                     /db_xref="RGD:1566006"
     CDS             147..821
                     /gene="RGD1566006"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_038945924.1"
                     /db_xref="GeneID:501828"
                     /db_xref="RGD:1566006"
                     /translation="MALLVSLPGRNLAMPQLLILLSASCLHTGNSAGYTRVNDFGVNQ
                     PAVLSGVQGGSIEIPFSFYFPWELAKDPQMSIAWRWKDFHGEFIYNSTLAFLHEHFKR
                     RVIVNWTQGQTSGVLRILNLKENDQARYISRVSLQTTEGMKSWQSVAGTQLIIIHALN
                     TTMGSPSIIPSAVPTAGLEDKRDQRNPSLLNLGAMVGMVLDKVVVIIPLYGWMIFLWW
                     KQRPAE"
ORIGIN      
        1 gttgctggcc acacagaggt ggagatggtc ctgtcaaact cagtcgtcca cttgagaatg
       61 tctgagcatg tgtttttatt taccctgatt ctctctggac tgctgagtgc cccagtgtcc
      121 ctagacaggg caaccttgac tgcctgatgg ccctgctggt ctcacttcct ggaaggaatc
      181 tggctatgcc tcaactcctt attttgctgt cggcatcatg tctgcacact gggaactcag
      241 caggatacac aagagtaaat gactttggtg tcaaccaacc agctgtcctc tctggagtcc
      301 agggcggctc catcgagatc cccttctcct tctacttccc ctgggagttg gccaaggatc
      361 ctcagatgag catagcctgg agatggaagg acttccatgg ggaattcatc tacaactcca
      421 ccttggcttt ccttcatgaa cattttaagc gccgggttat tgtgaattgg acacagggtc
      481 agacatctgg tgtcctcaga atcctgaact taaaggagaa tgaccaggcc agatatatca
      541 gcagagtttc tctgcaaaca actgaaggca tgaagtcgtg gcagtctgta gctggaaccc
      601 aactcatcat cattcatgct ctcaatacta ccatggggag cccctctatc atcccctctg
      661 cagtccccac agctggcctg gaggacaaaa gggaccagag gaatccttca ctgctgaacc
      721 tgggagccat ggttgggatg gtcttggaca aagttgtggt catcatcccc ctgtatggat
      781 ggatgatctt cctgtggtgg aagcaaaggc cagcagagta aagcctcaag cctagtaagg
      841 acacaattca gaagagatct tgtgagtgaa cacccctgga aaaactttgt tcctatcctt
      901 ccagcagaga gctcatcttt cctgtagacc ttaaggtcag aagaagaacc agtccagcaa
      961 atgaaagtct cactccaaga aatccttctc agtatttgtc ttgacccttt tctcccatgt
     1021 gtgacctcta agagagtggc agactctgtc taggatacaa gtcagtggga caggggcaag
     1081 gaccagggtc catactgaga ataacagcct gagaatcagg gttcccctct cccttattcc
     1141 ctgcacactg ccatctcatc tagaaacttg acccccctcc ctccatgctt tacattcagt
     1201 gacagacaac atgtcatgtt taatgcccat gttgggcttt tcctgaaagg tccaagtata
     1261 cacactaatt ttctcatttc ctgccatgtt gatattctgg actctgggtt ctcttctagg
     1321 atagttcctt tttgccatgt tcagtctgtc ttaacttttg atagtcagca gacctgctcc
     1381 taacagaaca cagaaacttt ccattccgac ccatgcttga tagagttcct tcaagcacag
     1441 tgtgtcatag ctgcagtgtg gtaccaatgt gtagagggcc gcaataacat tcgccaccgc
     1501 tagatggcgc tggcttccac tgtgccccat gtggaaggtc aggatagcct ccgccattac
     1561 aagatggcgc cagccttcgc cgcgccagcc gactcccttt caggaagtta actgtgcgca
     1621 tgtgcaagag tgccttcatg ccaggtcttt gcccactccg gggcgtgcct gatgagatca
     1681 tgggtaaaca accaatcagg tgtggatgtg ccacgctagg gtgtatataa gcacagcatg
     1741 ttggcgcgcc aaggcttcct ctttaagatc ataataaagt ttggtcacag taaggatttc
     1801 tatgtacccg cgtgtttctt gccggcgaga agtcacgcgt gggacatttg gtgccaagaa
     1861 cccgggacac aaaaaagcta catcatcacc ggtgccaaga ggaggctccc tttcatggaa
     1921 gaagtccaga agctgtgagt gggggtaaga ctctgagaga ccatgtttag ccttgatctg
     1981 ttccagctca gtcctctgcc ggatgcggca ggaaccttta tggttgctct ggccgccctc
     2041 gggttgtttc tattgacctt tgagtttcta gttaccgcca aacggcgtca gaggtcgcgt
     2101 gggaactgcc cagctgtaac agcaaa
//
