LOCUS       XM_006238333            4301 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to F-box and leucine-rich
            repeat protein 18 (RGD1565987), transcript variant X1, mRNA.
ACCESSION   XM_006238333
VERSION     XM_006238333.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238333.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006238333.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4301
                     /gene="RGD1565987"
                     /note="similar to F-box and leucine-rich repeat protein
                     18; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 7 ESTs, 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 235 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100359528"
                     /db_xref="RGD:1565987"
     CDS             128..2251
                     /gene="RGD1565987"
                     /codon_start=1
                     /product="F-box/LRR-repeat protein 18-like isoform X1"
                     /protein_id="XP_006238395.2"
                     /db_xref="GeneID:100359528"
                     /db_xref="RGD:1565987"
                     /translation="MSNDDEAAAEAAGDTHLLGFSDEILLHILSHVPSTDLVLNVRRT
                     CRKLAALCLDKSLVHTVLLQKDYQASEEKVKQLVKEIGREIQQLNMAGCYWLPGSTIE
                     HVARCHSLVKVNSSGCHLTSLRLSRVLSCLQRLRSLAIDVSPGFDASQLSSECKATLS
                     RVQELKQTLFTPSYGVVPCCASLQKLLLYFEILDRTREGAVLSGQLMVGQSNVPHYQN
                     LRVFYARLAPGYINQEVVRLYLAVLSDRTPENLHAFLISVPGSFAESGATKNLLDSMA
                     RNVALDALQLPKSWLNGSTLLQHMKFNNPFYFSFSRCTLSGGHLIQRLINGGKDLRSL
                     ASLNLSGCVHCLSADSLLRKAEDDIDSSILETLVESCCNLHHLNLSAAHHHSSDGLGR
                     HLCQLLARLCHLRSLSLPVCSVADSAPRPDRAPAPPAMHAVPRGFGKKVRIGVQTCPN
                     PFVGQSAPQPASVFWSLLKKLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQNV
                     GDSEVAAIGQLTFLRHLTLAQLPGMLTGSGLVSIGLQCQQLQSLSLANLGMMGKVVYM
                     PALADMLKHCKRLKDLRLEQPYFNANAQFFQALGQCSSLQRLCLVSRSGTLQPDAVLA
                     FMARCLQVVMCHMFTGESLTTCKSLQQSLLRSFQAERPALNVVIFPLLHEGLTDVIRD
                     VPMVHLDEITLFKSRVAEEPPNLWW"
ORIGIN      
        1 agaagaaggg agaggcccct tgccggggtc tctgtggagc tgtggccgcg ccggcttgga
       61 gcatccctgc gctggcaggc tgggggactg tgaggctgca tctccggcgg ccagctccgg
      121 agaggacatg tccaatgatg atgaggcagc ggcagaggca gcgggtgaca cccacctact
      181 tggcttctct gatgagatcc tcctacatat cctgagccac gtccccagca cagacctggt
      241 tctcaatgtg cggcgtacct gccggaagct cgcagccctg tgtctggaca agagcctggt
      301 gcacactgtg ctactgcaga aggactacca ggccagtgag gagaaggtga agcagctggt
      361 gaaggagatt ggccgggaga tccagcagct gaacatggca ggctgctatt ggctgcccgg
      421 ctccaccatc gagcacgtgg cccgctgtca cagcctggtg aaggtgaact cgtcaggttg
      481 tcacctcacc tcgctgcggc tgtccagggt gctctcctgc ctgcagcgcc tgcgctcact
      541 ggccatcgac gtgagccctg gcttcgacgc cagccagctg agcagtgagt gcaaggccac
      601 gctgagccgc gtgcaggagc tcaagcagac gctcttcaca ccgtcctacg gcgtggtgcc
      661 ctgctgtgcc agcctgcaga agctgctgct gtacttcgag atcctggacc gcacccgtga
      721 gggcgccgtc ctctccggcc agctcatggt gggccagagc aacgtgcccc actaccagaa
      781 cctgcgtgtc ttctacgcac gcctggcccc tggctacatc aaccaggagg tggtaaggct
      841 ctacctcgct gtgctcagcg accgcacgcc tgagaacctg catgccttcc tcatctccgt
      901 ccccggcagc ttcgcagaga gcggggccac caaaaacctg ctggactcca tggcccgcaa
      961 cgtggcccta gatgccctgc agctgcccaa gtcctggctg aatggttcca ccctcctcca
     1021 gcacatgaag ttcaacaatc ccttctactt cagcttcagc cggtgtacgc tgtcaggcgg
     1081 tcacctgatc cagcgactca tcaatggggg gaaggacctg cgtagcctgg ccagcctcaa
     1141 cctcagcggc tgcgtgcact gcctgtccgc ggactcattg ctgcggaagg ccgaggacga
     1201 catcgacagc agcatcctcg agactctggt ggagtcctgc tgcaacctgc atcacctcaa
     1261 tctctcagcc gcccatcacc acagctctga cggcctgggc cgccacctct gccagctcct
     1321 ggctcggctc tgccacctgc gctccctgtc cctgcctgtc tgctctgtgg ccgactcggc
     1381 acccaggcct gaccgtgcgc ctgccccgcc agccatgcat gcagtacccc gtggatttgg
     1441 caagaaggtg cgcattgggg tgcagacctg tcccaacccc tttgtgggcc agtcggcccc
     1501 acagcctgcc tctgtgtttt ggtctctgct gaagaagctc ccatttctgg agcacctgga
     1561 actgatcggg tccaatttct cctcagccat gccccgcaat gagccagcca tccgcaactc
     1621 cctcccgccc tgcagtcggg cacagaacgt gggggactca gaggtggccg ccattggcca
     1681 gctgaccttc ctgcggcacc tgacactagc ccagctgcca ggcatgctga cgggctctgg
     1741 actagtgagc attggcctac agtgccagca gttgcagtcc ctgtcgctgg ccaacctggg
     1801 catgatggga aaggtggtgt acatgcctgc tcttgccgac atgctgaagc actgcaagcg
     1861 tctgaaggac ctgaggctgg agcagcccta tttcaacgcc aacgcacagt tcttccaggc
     1921 cctgggccag tgctcctctc tgcagcgcct gtgcctggtg tcgcgcagtg gcactctgca
     1981 gcccgatgcc gtgttggcct ttatggcccg ttgcctgcag gtcgtcatgt gtcacatgtt
     2041 caccggagaa tccctcacca cctgcaagag cctacagcag tcgctcctcc ggagtttcca
     2101 ggccgagaga cccgcgttga acgtcgtcat cttccctctg ctccacgagg gcctgacaga
     2161 tgttatccga gatgtcccca tggtgcacct ggacgagatc accttattca aaagcagagt
     2221 ggccgaggaa cccccgaacc tgtggtggtg agaggggccc ccctggcacc gccccgccca
     2281 tcgctcctgc tggcagagac ttttgcagac agtgggtcct tgtcgggaca ggaagaaagt
     2341 ttccggttct cctgagacat tcaccccagt cccctgggtt tttctctcat tcttcggagt
     2401 gctcagtgac aagaagtaat ctggtgagcc atggatgaaa gggcagtgga tgagccaggc
     2461 tggccttcag gggctggcca tgctcctggg ggctgtgtgg gctgcgagcc ccgggcttcg
     2521 gcctgcttca gcctggggac tgtcccctgc acctttgtcc gtggtcatct acaggtgagc
     2581 tcagtaatgt gactgtaccc acatggagtc agggtgggcc aggctgtcac tgtgaaatga
     2641 catttgtgag cctgtggctc cttttcctat tgagatacat ttagggcgtg gtccagtggc
     2701 agagtactcg cctcgtgcac gtgagaccct gggttccatc cccaccacaa agaaaaacgt
     2761 gttttagccc agtgttgtct ctgagatgtt ttcagctcag tgatcttgta ccagaggggc
     2821 ccgggcagag accgtcgggt ggcttcatgc ccagattgag cctgaggagt tgagcctgta
     2881 tctcactttt ccttcagtct gttggcttcc gctttaaagc tccaggtgct gtggtggtcg
     2941 caatgcttcg ctttacaact cctggcctcg ttaggataga caaaaatggt aaaagccaga
     3001 gtgagctgga gcagggagca cctttctgtt tagtcctcac aaaatccacc aagagcgccg
     3061 cttgagtgag ttagtgtgtg ggcacaggcc caggttctgt ccccagcaac gcacacacct
     3121 gcctgtggca gctcacagtt gtaatcccag cactcaggag gtcaaggcac aagtgtgggt
     3181 caccctcggc tacataattg agatagagga taacctgggc tacataaaac cctgtctcac
     3241 tctcaacaca tcagaaaaaa aggacaaagc taaagaggac ccagtgtctg tggcttcact
     3301 catctctcac ggtagcacga ctgagccagc agcccccagc ggggatgtgt gggagcatgt
     3361 gctccgattg atccaactga ctcccacctg ctcctctcct gtgatggctc caggacatgt
     3421 ggacaccgat gcaggtggct tccagtccag acatctcagt ccatgcaggc ccaccaggcc
     3481 tcacgcactc tggtgacctc cccagacctg gcctgtcctc atcttctgtc tcgctggggc
     3541 ctccttccca gcatcccttg ctggtgagga gcagagctag gctgtgccca ggagacctgg
     3601 ctttggccac agtgttaggg aaacagccct caggcccagg ccccaagaac tgtacctctg
     3661 ccgggcccct cgccattcta gcctcagtgt ttacgcgggg tctccagggc caagccctcc
     3721 ctcctcagcc agtctcttgc ctgagggaat cctcgattct ctctagagcc tacggtgctc
     3781 ctccctgtcc ttgttgctga gtgatcttag ctcctagcca gagggattgg tctgtgtgca
     3841 ggagatccca ggggacaccc accccatacc cggagcccct atcctcccag acctaacaca
     3901 gtctgagcct gtcctgtccc ttcctggcgt cacaggctat tggaataagg ttccagggag
     3961 cagattgaag tctcacaagg ctggaaccac ttcttccagt tcctggggga tgtctttaga
     4021 gcattaaact ggagagccac ccataggcta tccaggacca actgctgctt gcccttaaca
     4081 tgagaatgcc gctgctccca gcctgtgata gaaacaggct gcctgaaggt atctgtccca
     4141 aggatccttg tgacttcttc ctttaaaggt ggtcctactc agctgggtat ggtgctgaag
     4201 gtttaaatcc ctgtgagttc gaggccagcc tggttggcat agtgagttct aggacagcca
     4261 gggctatgta gagactctgt ctcaaaaaaa aaaaaaaaaa a
//
