LOCUS       XM_039100490             600 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hypothetical gene supported by
            NM_021262; AF171072 (RGD1565965), mRNA.
ACCESSION   XM_039100490
VERSION     XM_039100490.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100490.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..600
                     /gene="RGD1565965"
                     /note="hypothetical gene supported by NM_021262; AF171072;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 Proteins, and 72% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:302513"
                     /db_xref="RGD:1565965"
     CDS             25..600
                     /gene="RGD1565965"
                     /codon_start=1
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase-like"
                     /protein_id="XP_038956418.1"
                     /db_xref="GeneID:302513"
                     /db_xref="RGD:1565965"
                     /translation="MAEVGSKSMLFVCLGNICRSPIAEAVFRKLVIDENVSDNWRIDS
                     VATSTYEVGNPPDYRGQHCVKKHGIHMQHIALQIAREDFATFNYILCMDESNLRDLNR
                     KSNQVKNCRAKTELLGSYDPQKQLIIEDPYYGNDSDFEVVNQQYLRCCKAFLEKTHYL
                     VLTTTTEQLTPQCCTQGWWQSLAPYHASLFS"
ORIGIN      
        1 gggcgccagg gtctgcaccg aaacatggca gaggttgggt ccaagtcaat gctgttcgtg
       61 tgtctcggta acatttgccg gtcacccatt gcagaagcag tgttcagaaa attggtaatt
      121 gatgaaaacg tttcagataa ttggaggata gacagtgtgg ctacatccac ctatgaagtg
      181 gggaaccccc ctgactatcg agggcagcac tgcgtgaaaa aacatggcat ccacatgcaa
      241 cacattgcac tgcagattgc aagagaagac tttgccacat tcaattatat actgtgtatg
      301 gatgaaagca atctgagaga tctgaataga aaaagtaatc aagttaaaaa ctgcagagct
      361 aaaactgagc tacttgggag ctatgatcca cagaaacaac tcattattga agatccctat
      421 tatggcaatg actctgactt cgaggtggtg aaccagcaat accttaggtg ctgcaaggcc
      481 ttcctggaga agactcacta cctggtccta accaccacca ctgagcaact cactcctcag
      541 tgctgtaccc aagggtggtg gcagtcctta gccccatatc acgcctctct tttcagctga
//
