LOCUS       XM_039100266            4688 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Spindlin-like protein 2
            (SPIN-2) (RGD1565862), transcript variant X1, mRNA.
ACCESSION   XM_039100266
VERSION     XM_039100266.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100266.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4688
                     /gene="RGD1565862"
                     /note="similar to Spindlin-like protein 2 (SPIN-2);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 34 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:302579"
                     /db_xref="RGD:1565862"
     CDS             3005..3967
                     /gene="RGD1565862"
                     /codon_start=1
                     /product="spindlin-2-like"
                     /protein_id="XP_038956194.1"
                     /db_xref="GeneID:302579"
                     /db_xref="RGD:1565862"
                     /translation="MEPSSTQKAQEQHTSKASGQDVEKEKMNKKRAGQKRKMENETTN
                     RRRAGQKRQMENETTNRRRAGQKRQMENETTNRRRAGQKRQMENETMNRRAGQKRQRR
                     RSPTPPRRNIVGCRISHEWKEGDEPITHWKGTVVEQVPVNPSLYLVKYDGVDCVYGLE
                     LYKDKRVRSLKILSNNVGSSQATDPSFADTIIGKAVEHVFEGEDGSKDEWKGIVLGQA
                     PVLDANFYVTYENDPVLYMYQLFEDYREGDLRILEGFDEPPPLDIPVELLSFLVGTCA
                     EYTTDDGSKRVGMVIHQVEGNPSVFLVKFPDDVHIYVCSLVKIR"
ORIGIN      
        1 agctgatctt ccaggctcac ctctggtgag cactccttgt gctggacgcc ttcctaccag
       61 ctatccagct attaggagaa gggactacaa ggtgcctgta gccccctcca gcacacacta
      121 tcctctgcca gccagtacaa ggcggcagag gagcctcctt cgggagagct aagcagaagg
      181 gtctgtgagc ccagaagcaa acagttccag gacaccgcgt gagcaaagcc ggacccgcgc
      241 gcccaccagc agcaccggga caccgcgtga ccaacgcaga aggaccagag agcgcccaga
      301 acaccagctg caatcacttc ctctgtattg gccaccccct cgggggtctc ttagcctggg
      361 cggcggatct tccaggctca ccactggtga atacaccttg tggctgagga gcctccttca
      421 ggagagctaa gcggaagggt ccgcgagccc accagcagca ccggaacacc gcgtggccaa
      481 agcagaagga cctgggagcg cccagaacac cagccgcggt cacctcctct gtattggcca
      541 cctgctcagt gggctcttag ggtgcgcagg cccgtcttca aggctcacct ctggtgagca
      601 ctccttgtgc tggacgcctt cctaccagct atccagctat taggagaagg gactacaagg
      661 tgcctgtagc cccctccagc acacactatc ctctgccagc cagtacaagg cggcagagga
      721 gcctccttcg ggagagctaa gcagaagggt ctgtgagccc agaagcaaac agttccagga
      781 caccgcgtga gcaaagccgg acccgcgcgc ccaccagcag caccgggaca ccgcgtgacc
      841 aacgcagaag gaccagagag cgcccagaac accagctgca atcacttcct ctgtattggc
      901 caccccctcg ggggtctctt agcctgggcg gcggatcttc caggctcacc actggtgaat
      961 acaccttgtg gctgaggagc ctccttcagg agagctaagc ggaagggtcc gcgagcccac
     1021 cagcagcacc ggaacaccgc gtggccaaag cagaaggacc tgggagcgcc cagaacacca
     1081 gccgcggtca cctcctctgt attggccacc tgctcagtgg gctcttaggg tgcgcaggcc
     1141 cgtcttcaag gctcacctct ggtgagcact ccttgtgctg gacgccttcc taccagctat
     1201 ccagctatta ggagaaggga ctacaaggtg cctgtagccc cctccagcac acactatcct
     1261 ctgccagcca gtacaaggcg gcagaggagc ctccttcggg agagctaagc agaagggtct
     1321 gtgagcccag aagcaaacag ttccaggaca ccgcgtgagc aaagccggac ccgcgcgccc
     1381 accagcagca ccgggacacc gcgtgaccaa cgcagaagga ccagagagcg cccagaacac
     1441 cagctgcaat cacttcctct gtattggcca ccccctcggg ggtctcttag cctgggcggc
     1501 ggatcttcca ggctcaccac tggtgaatac accttgtgtc agaggagcct ccattgggag
     1561 agctaggcag aaaggtctga gaacccacca gcagctccag gacaccgcgt gagcaaagca
     1621 gcatccgcga gctcaccagc agcaccagga cactgtgtga ctaaaataga agcaagtgcc
     1681 cagaacatca accttggtca cttcctctgt attggccacc cgctcagtgg tctcttagcc
     1741 tgggcaggag gatcttccag gctcaccttt ggtggcagag aagccttgtt ctagagagct
     1801 aggcataagg gtcgagagcc caccagctgc agcaggacac cgtgtgacca aagcaaaagg
     1861 acctgtcagc gcccagaaca ccagctgtgg tcacttcctc tgtattggca actgctcagt
     1921 ggattcttag cctgggcagg cggatcttcc aggctcacct ctgaagttct tcaggtttcc
     1981 accccaccag atatcactcg cagatccacc gcttcctgac ataaacttag gagaactgca
     2041 tcttgtccag tccaggcgct tactacaccc aggacagctc cagagaagcg acctccagat
     2101 gttccaatct cctatcacag acacagatgc ttctattgga cctcttcctt ctgacctaga
     2161 tggttccaca gaccttggac aacaaggaaa cagtcaactc taagactgga caaacatctc
     2221 ttacccactt ttctaggttc ccttgagagg cattgcccta aaacaagaat cattaatcag
     2281 agatcacaat gtccctattc ctgctccacc atgtcctcca atttctcttt tgtaattaaa
     2341 ccaaaatggg gaaaagaaag cattctgtct aatctccacc cccacagttt cccggcaaca
     2401 gccagttgtg cctgatacta taaaagtggc tgcttgcggc ctcctcactg tcttgctcct
     2461 gcttcctctt gctctccctt gcccctttgt cccttctcta cccattcccc tccccctttc
     2521 tctccatatg ctcatggctg gcctctactg ctctccttct ctcctcttct ctcctgtctc
     2581 tttctctggc ctactaccct cttaactccc ctccccttgc cctgaaaaaa ttgtattcta
     2641 ttctatactg ttctgtggct ggtccctcag gtggaaggga tgcctcagca tgggcccact
     2701 gagacatccc ctttccccag acctccatag aatatatccc ccctctcttt atctttttat
     2761 aaacacaatg accacaattc cttttccata gggtaaagct ttaaagaagg agaaagagaa
     2821 aactccattc aattgaaaga gcagggaaag ttggcagagg agcctcctca aggagagcta
     2881 agcagaagga tccgggagcc caccagcagc accgggacac cagcaagggt cacttcgtct
     2941 gtccctccac cagctcagac aactcttgca ggcagccggc agatcctccc ttctcaattt
     3001 tgccatggag ccctccagca cccagaaagc acaagagcag cataccagca aagcttcagg
     3061 acaggacgtg gaaaaggaaa agatgaacaa gaagagagct ggtcagaaga ggaagatgga
     3121 aaacgaaacg acgaacagga gaagagctgg tcagaagagg cagatggaaa acgaaacgac
     3181 gaacaggaga agagctggtc agaagaggca gatggaaaac gaaacgacga acaggagaag
     3241 agctggtcag aagaggcaga tggaaaacga aacgatgaac agaagagctg gtcagaagag
     3301 gcagagacgc agatctccaa ccccgcctcg acggaacatt gtgggctgca gaatttctca
     3361 tgagtggaag gaaggagatg agcccatcac acactggaag ggcactgtgg tggagcaggt
     3421 gcctgtaaac ccctctctct acctggtgaa atatgatgga gtggactgtg tctacggact
     3481 agaactatat aaagacaaga gggtacggtc ccttaaaatt ctttcaaaca acgttggatc
     3541 atcccaagcc actgacccta gctttgctga taccattatt ggcaaagctg tagaacatgt
     3601 attcgagggt gaggatggct ctaaggatga atggaaaggg atcgttctcg gtcaagctcc
     3661 tgtcttggat gccaactttt atgtgaccta tgagaacgac ccagtgcttt acatgtacca
     3721 gctttttgaa gactatagag agggggacct ccgtatcttg gaaggctttg atgagcctcc
     3781 gcctctagac atccccgttg aacttttgag tttcctagta ggcacatgtg cagaatacac
     3841 cacagatgat ggctccaaga gggttgggat ggtaatccac caggtagaag gcaatccatc
     3901 tgtcttctta gttaagtttc ctgatgatgt gcacatctat gtctgttcct tggtgaaaat
     3961 ccgctaagcc tttgaaatag agttgccatc actgtagaaa tagagtgaaa attgtacttt
     4021 ccatagaagt ataattgaag atgtaatttc tagatgtgcc caggtttctg gtcttcagtg
     4081 tgtctgagtc tcactgcagg cataatgttg tcctgacaaa agcaaaattc tgtgggtatg
     4141 gcacgctgtc agaagcactt tgctgggtgt gtctggtggg tggagcaggg aaccatggaa
     4201 cagctgtcaa ttcagcctct gagagaagtg agcttgtctc ataagcagtc atctaaaaat
     4261 gcaatgggac ttagctggtc tggtcttggg gggaggagga gaaggatctg gagatggttt
     4321 gtggaggagg gaacaggagg aggtaactgc ctagagaggt ggaaggaagc caaacagaga
     4381 gggggagact ccttgaagag gaacagagtg aaggaagaaa tatggattgg gaagggaggg
     4441 ctggaaacag agtgaagcct ggtggcacct tcaggctttc aagaaagcta aggaattcag
     4501 gaagaaagat ttagtgtaaa agaggtatac agcaagggta ggcagagtaa gccatttaca
     4561 aaggtccctg agtagaggct caaggatcag ggagtccagg aagacccatg catacatagg
     4621 tggtggagcg actaaaggag atacccgtag gaggcacaat tccaagaaga aaggcagtct
     4681 ctgggtcg
//
