LOCUS       XM_039091195            1056 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to High mobility group protein
            1 (HMG-1) (RGD1565762), mRNA.
ACCESSION   XM_039091195
VERSION     XM_039091195.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091195.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1056
                     /gene="RGD1565762"
                     /note="similar to High mobility group protein 1 (HMG-1);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:297853"
                     /db_xref="RGD:1565762"
     CDS             51..626
                     /gene="RGD1565762"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_038947123.1"
                     /db_xref="GeneID:297853"
                     /db_xref="RGD:1565762"
                     /translation="MRAQHLRQGKQEPDGHWATLCLAEENQLNNGNGDPKKPRDKMSS
                     YAFFVQTCQEEHKKKHPYASVNFSEFSKKCSERCKTVSFKEKGRFEDMAKDDKARYER
                     EMKTYIPAPKEETEKKFKYPNASKRPPSAFFLFCSEYRPKIKGEHPGLSIGDAAKKLG
                     EMGNNTAPVDKQLYEKKATELKEKYEKDIAA"
ORIGIN      
        1 cctggtgaga ggttgccttc aatttttctt attcttgata ttggtgactc atgagagccc
       61 aacatttacg ccagggcaag caagagccag atggacattg ggcaactctg tgcctcgcgg
      121 aggaaaatca actaaacaat ggcaatggtg atcctaagaa gccaagagac aaaatgtcct
      181 catatgcatt ctttgtgcaa acctgccaag aggagcacaa gaagaagcac ccgtatgctt
      241 ctgtcaactt ctcagagttc tccaagaagt gctcagagag gtgcaagacc gtgtctttta
      301 aagaaaaggg gagatttgaa gatatggcaa aggatgacaa ggctcgttat gaaagagaaa
      361 tgaaaactta cattcccgcc cccaaagagg agaccgaaaa gaagttcaag taccccaatg
      421 cctccaagag gcctccttcg gccttcttct tgttctgttc tgagtaccgc ccaaaaatca
      481 aaggcgagca tcctggctta tccattggtg atgctgcaaa gaaactagga gagatgggga
      541 acaacactgc cccggttgac aagcagctct atgagaagaa ggccaccgag ctgaaagaga
      601 agtacgagaa ggatattgct gcctaaagag ctaaaggaaa acctgatgca aagaaaaagg
      661 gggtggacaa ggctgagaag agcaagaaaa agaaggaaga ggaagatgat gaagaggatg
      721 aggaagagga ggaagaagag gaagacaaag aagatgatga ataagttggt tctagcacag
      781 ttttattttt cttctctata aagcatttaa cccccctgta aaaaattcac tccttttaaa
      841 caaaataatt gaaatgtaag gctgtgtaag atttgttttt aaactgaaca gtgtcttttg
      901 ttgtgtagtt aacacactaa caaatgtgtc tttagctagc cctgtcctgg tggtattttc
      961 aatagccact aaccttgcct ggtacagtct ggggattgta aattggcatg gaaattaaat
     1021 caggttctta ttggtgcaca gcacaaatta gttcta
//
