LOCUS       NM_001126286            1368 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus similar to human chromosome X open reading frame
            38 (Cxhxorf38), mRNA.
ACCESSION   NM_001126286 XM_001060750 XM_228714
VERSION     NM_001126286.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1368)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161948.1.
            
            On May 11, 2008 this sequence version replaced NM_001126286.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161948.1, SRR8487230.117254.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132263, SAMD00132265
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..1368
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /note="similar to human chromosome X open reading frame
                     38"
                     /db_xref="GeneID:317344"
                     /db_xref="RGD:1565685"
     exon            1..228
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..975
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /codon_start=1
                     /product="uncharacterized protein CXorf38 homolog"
                     /protein_id="NP_001119758.2"
                     /db_xref="GeneID:317344"
                     /db_xref="RGD:1565685"
                     /translation="MVLSELAARLNCAEYKNWVKAGQCLLLLRSCLQGFVNREVLSFH
                     RGLLIAVPGLGPQATCRGGSRCSPRARQFQPHCQVCTDWKREILRHHINRNGDVHWGN
                     CRPGLWPVDPWEVAKAFMPRGLADKRGPEECDAVALLSLINSCDHFVVDRKKVTEVIK
                     CRNEIMHSSEMKVSSTWLRDFQIKIQNFLYEFKNIPEIVAVYSRIEQLLTSDWAVHIP
                     EEDERDGCEFETESYLSVSQIHEIEIELLKEKLQEMYLQAAAEEVLSEEISNQLDVVK
                     GFLQSNTDLRNALTEDLQKLDSLHLQHQKQISKDAGSQTPERKT"
     exon            229..363
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
     exon            364..483
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
     exon            484..633
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
     exon            634..813
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
     exon            814..976
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1345
                     /gene="Cxhxorf38"
                     /gene_synonym="RGD1565685"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggagtaag acatggtgct gtcggagcta gcagcgcgcc tcaattgcgc cgaatacaaa
       61 aactgggtga aggcaggaca gtgccttctg ttgctacgca gctgtctgca gggttttgta
      121 aaccgcgaag tgctctcctt tcatcgtgga ctgctgatcg cagtccctgg ccttggtccc
      181 caggccacct gccgcggcgg ttcacggtgc agcccgcgcg ctcgccagtt tcagcctcat
      241 tgtcaggtat gcacagattg gaaacgcgag atcttgcggc atcacatcaa cagaaatgga
      301 gacgtgcact ggggaaattg caggcctggc ctctggccag tggacccttg ggaggtagcc
      361 aaggccttca tgccccgagg actggcagac aaacgagggc ctgaggaatg tgatgcggtt
      421 gctcttttaa gtctcatcaa ttcctgtgat cactttgtgg ttgaccggaa gaaggtcaca
      481 gaggtaatta aatgtcgaaa cgagataatg cactcttcag agatgaaagt ttcatctact
      541 tggcttcgag attttcagat aaagatccaa aattttctct acgaattcaa gaatattcca
      601 gagattgttg cagtatattc cagaatagaa cagctgttga catctgactg ggctgttcac
      661 atccctgagg aagatgaacg agatgggtgt gaatttgaaa cagaaagtta cttgagtgtg
      721 agccaaatcc atgaaatcga aatagaactg ctgaaggaaa aactgcaaga gatgtatctt
      781 caagcagcag cagaagaggt gttgtcagaa gagatctcaa atcaactgga tgtagtgaaa
      841 gggtttctgc aaagcaacac agatcttaga aatgccctta cagaagactt gcagaaacta
      901 gacagcctcc atctacagca tcaaaaacaa atttcaaagg atgcagggag tcagacacct
      961 gaaaggaaga cttgaggaaa cctggactac tcttgcagga aacctggact attccttaca
     1021 ttctcaagaa agcaaacgac acccccctat ttcccacata taccctttac ttagattcac
     1081 accaacctcc atccccgcag aacacactat gtgactgagg atgaccttga actgctgatc
     1141 cttctgcttg cacctcttga gaggtgatat tacatgcctg gctctaagag tatttctttt
     1201 aaactttttg tagattcctt atgaatttca catcatgtac cccaatccta cttatcttcc
     1261 cttccctttg tatctaccat gcacccttgc gacctctgcc caacaaaata aaaaactaaa
     1321 attaaaaaaa aaaacattaa gaaaaaaaaa aaaaaaaaaa aaaaaaaa
//
