LOCUS       NM_001177686            1525 bp    mRNA    linear   ROD 07-OCT-2023
DEFINITION  Rattus norvegicus CD177 molecule like 2 (Cd177l2), mRNA.
ACCESSION   NM_001177686 XM_574388
VERSION     NM_001177686.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC158626.1.
            
            On May 13, 2010 this sequence version replaced XM_574388.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158626.1, CV105896.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1525              BC158626.1         1-1525
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1525
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /note="CD177 molecule like 2"
                     /db_xref="GeneID:499097"
                     /db_xref="RGD:1565655"
     exon            1..238
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /inference="alignment:Splign:2.1.0"
     exon            239..343
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /inference="alignment:Splign:2.1.0"
     CDS             280..885
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /note="CD177 antigen-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC499097 precursor"
                     /protein_id="NP_001171157.2"
                     /db_xref="GeneID:499097"
                     /db_xref="RGD:1565655"
                     /translation="MGACHIQYALLLSLLGFVPCSDTLTCNKGIMVKLGSNFAKAPIE
                     WKTLGTIESAPNEICQETVLLVDIGEKSLILASKSLSNPGDIQSKNTQVFSSGPGLVA
                     ASYAHFCDTELCNNAESTSVLLDSLSVKAPSKLGTTKCPVCLQFQGSCSQHITFVFCP
                     ADTHCYISDMTVEGGQLGKLYAQGHGFRDSGEGMGAAASWV"
     exon            344..484
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /inference="alignment:Splign:2.1.0"
     exon            485..670
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /inference="alignment:Splign:2.1.0"
     exon            671..1499
                     /gene="Cd177l2"
                     /gene_synonym="RGD1565655"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttcagcgcg caactgaagt gccttccaag cccgaggttt tggtgaccat attctgaagc
       61 cagaaagaat ttgctactta agtggaaaag aagcagtgat agacaaagat cccctagccc
      121 cgaggaaaga agctagtgag aaagagctgg ggagaaaagg gagaaggggc ctatagggat
      181 cttcagtctg agaggagggc taaggactgg agacctgagt tttatgaaag gaaaccagtt
      241 cccaggtcct gatcagctct tcccagtctc agagaagcca tgggagcctg ccacatccag
      301 tacgccctgc tcctctctct gctgggcttc gtcccctgct cagatacgct gacctgtaac
      361 aagggaatca tggtgaaatt gggcagtaac tttgctaagg cgccaattga gtggaaaaca
      421 ttggggacca ttgaatctgc acctaacgag atatgtcagg agacagtcct gctcgtagat
      481 ataggtgaaa aatctctcat attggctagc aaaagcctca gcaaccctgg ggacatccag
      541 agcaaaaata cccaggtgtt ttcttctgga cctggactag tggctgcttc ttatgcccac
      601 ttctgtgaca ctgaactgtg taacaatgct gagagcacca gtgtcctact tgactcccta
      661 tcagttaaag ccccctctaa gctgggaacc accaagtgtc ctgtctgctt gcagtttcag
      721 ggttcctgct cccagcacat cacctttgtc ttctgcccag cggacacaca ctgctatatc
      781 agtgatatga ctgtagaagg aggtcagtta ggaaagctgt atgcccaggg ccatggcttc
      841 agggactcag gagaagggat gggtgctgct gcctcctggg tctgagggag ggattcagga
      901 cttggactga gattccttgg tccttaggag gagggcggga gcctgaactc ctgggcagga
      961 gttggttgtt tttgttgttg ttgttgtctt tgtgttgttt ttcaagctga ctgaagtatc
     1021 cctctccacc ccctgcccct tactggatct tcatattgta ggtgggctca aagccacctt
     1081 tagtgttgat ggatgcctgg tcacctcttc caaaacacta ttgaaaaacc aaacatcagt
     1141 tgggatcttc tccatagtgg aagtctctga tataaacagc accaattcac tctcacatgt
     1201 acttgtccct ggtaccctcc tggcctggac tttagggctc ttggctctcc tcagcccttt
     1261 gtgtacaggg atttgtcctc tcggctgaac ccgttcctgg acagccatac tcagccctcc
     1321 tctgacttcg taacccaaag gctgggcact gtctgtcggc ctgcactgtc gggtgccctc
     1381 atccctcacc cacacacctc tgcctcctca tgtttagata tgggagccgc tgaactcacc
     1441 ctgctccaga gcagacaacc acacatgtgg aaaaataaag ttgctgttgt ttctccaaaa
     1501 aaaaaaaaaa aaaaaaaaaa aaaaa
//
