LOCUS       XM_039097334            1281 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Wolf-Hirschhorn syndrome
            candidate 1 protein isoform 3 (RGD1565590), mRNA.
ACCESSION   XM_039097334
VERSION     XM_039097334.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097334.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1281
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1281
                     /gene="RGD1565590"
                     /note="similar to Wolf-Hirschhorn syndrome candidate 1
                     protein isoform 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 3 Proteins, and
                     90% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:308372"
                     /db_xref="RGD:1565590"
     CDS             1..1149
                     /gene="RGD1565590"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase NSD2-like"
                     /protein_id="XP_038953262.1"
                     /db_xref="GeneID:308372"
                     /db_xref="RGD:1565590"
                     /translation="MAVSGSLKILVAASAMWATKSENGSVGPCRTLVSKDKNLSPKIK
                     LLKPISGRLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLRLNPQVAKEAGIAT
                     EPLGEMVDSSVANEEAAVDPGTMREEDIPVKRRRRAKRSSSAENQEGDPGTEKSTPPK
                     MADAEPKRGVGSPAGRKRSTGSASRSRKGDSAAQFLVFCQKHRDEVVAEHPDASEEEI
                     EELLGSQWSMLNEKQKARYNTKFSLMISAQSEEDSGNTSGKKRTHTKRTDDPPEDVDV
                     EDAPRKRLRTDKHSLRKRETITDKTARTSSYKAIEAASSLKSQAATKNLSDACKPLKK
                     RNRASATASSALGFNKSSSPSASLTENELLWDPTSVKLDLNSAALYCT"
ORIGIN      
        1 atggccgtat cagggtctct gaagatcttg gtagcagcct ctgccatgtg ggccacaaag
       61 tctgaaaacg gctctgtggg cccttgcaga accttggtaa gcaaagacaa aaatctttct
      121 cccaaaatca agttgttgaa acctatttca gggagattga gagcccagtg ggaaatgggc
      181 attgtccagg ctgaggaagc tgctagcatg tcagtagagg agcggaaagc caagtttact
      241 ttcctttatg tgggggacca actgcgcctc aaccctcaag tggctaagga ggctggcatt
      301 gctacagaac ctttgggaga aatggtggac tcttcagtgg ccaatgaaga agctgctgta
      361 gaccctggga ctatgagaga agaggacatt cccgtaaaga gaaggcgaag agccaaaagg
      421 tctagttctg ctgagaacca ggaaggagac cccggcacag aaaagagtac acctccaaag
      481 atggcggatg ctgaacctaa gagaggcgta ggttctcctg ccgggaggaa aaggtccaca
      541 ggatctgcct cacggagcag aaagggagac tcagcagctc agttcttagt cttttgtcaa
      601 aaacacaggg atgaggttgt agctgaacac ccagatgcct cagaggagga gattgaagaa
      661 ttgcttgggt cccaatggag catgctcaat gaaaagcaga aagcacgata taatacaaag
      721 ttttccctaa tgatctctgc ccagtctgaa gaagactctg gaaataccag tgggaaaaaa
      781 aggacccaca caaaaaggac agatgaccct cctgaggatg tggatgtaga agacgcaccc
      841 aggaaaagac ttaggacaga taagcacagt cttcggaaga gagagacaat caccgacaaa
      901 acggccagaa cgagctcgta caaggctata gaggcagcct cctcactcaa gagccaggca
      961 gcaacgaaaa atttgtctga tgcttgcaaa ccactgaaga agcgaaatcg ggcttctgca
     1021 acagcgtctt cagcacttgg gtttaacaaa agttcatctc cttctgcatc cttaactgag
     1081 aatgagcttt tatgggaccc cacatcagtc aagttggact tgaactcagc cgccctgtac
     1141 tgcacttaga atgatgtaat accccaagat gtctgctgca ggtggtgcct catcgtatac
     1201 actaagtgac atttctatca caatcatttt atggaagatg tgtgataatc tgtttttact
     1261 ggtattaata aacacataca a
//
