LOCUS       XM_039108504             773 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ribosomal protein L27a
            (RGD1565415), mRNA.
ACCESSION   XM_039108504
VERSION     XM_039108504.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108504.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..773
                     /gene="RGD1565415"
                     /note="similar to ribosomal protein L27a; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 25 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:500123"
                     /db_xref="RGD:1565415"
     CDS             235..681
                     /gene="RGD1565415"
                     /codon_start=1
                     /product="60S ribosomal protein L27a-like"
                     /protein_id="XP_038964432.1"
                     /db_xref="GeneID:500123"
                     /db_xref="RGD:1565415"
                     /translation="MPSRLRKTRKLWGHVSHGHCRIGKHRKHPGGRGNAGGEHHHRIN
                     SDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSKQTRVNAAKNKTGAAPIID
                     VVRSGYCRVLGKGKLPKQPVIVKAKFFSRRAEEKMKGVGGACVLMA"
ORIGIN      
        1 agattccaaa gaaaccagaa acttccactt cagtttagct ctgtggttgt ggagatgttt
       61 tctttatttt ttattcccca tgctagttaa ttcatcttaa tgagttacgt gaagcagtga
      121 ccttagattc cctcaagaaa tggaggtttg ccaagaacag cactattcac aatttaagga
      181 agttttaggg gacagattaa agtgtgaaca agctctttct tttctgccac cgccatgcca
      241 tccagactga ggaagacccg gaaactctgg ggccacgtga gccacggcca ctgtcgcatc
      301 ggtaagcacc gcaagcaccc aggaggccgc gggaatgctg gaggcgagca tcaccacagg
      361 atcaactctg acaaatacca tccaggttac ttcggcaaag ttggcatgag gcattaccac
      421 ttgaagagga accagagctt ctgcccaact gtcaacctgg ataaattatg gacgttggtc
      481 agcaagcaga cacgggtcaa tgcagcaaaa aacaagactg gagctgctcc catcattgat
      541 gttgttcgat caggctactg cagagttctg gggaagggga agctccctaa gcaacctgtc
      601 atcgtgaaag ccaaattctt cagcagaaga gctgaggaga agatgaaggg tgttggaggc
      661 gcctgtgttc tgatggctta aagccacttc agaggttaat gaaatgcaaa cattttccat
      721 gtgaaaaaaa aataaagtgt gaacaaattg ttgggccttt aatgtcttag gct
//
