LOCUS       NM_001113792             980 bp    mRNA    linear   ROD 15-MAY-2024
DEFINITION  Rattus norvegicus Ly6-C antigen like 1 (Ly6cl1), mRNA.
ACCESSION   NM_001113792 XM_001074056 XM_578686
VERSION     NM_001113792.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158674.1.
            
            On or before Jan 27, 2008 this sequence version replaced
            XM_001074056.1, XM_578686.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158674.1, DY309428.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN06680429
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..980
                     /gene="Ly6cl1"
                     /gene_synonym="RGD1565410"
                     /note="Ly6-C antigen like 1"
                     /db_xref="GeneID:503162"
                     /db_xref="RGD:1565410"
     exon            1..229
                     /gene="Ly6cl1"
                     /gene_synonym="RGD1565410"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..564
                     /gene="Ly6cl1"
                     /gene_synonym="RGD1565410"
                     /note="Lymphocyte antigen 6B-like"
                     /codon_start=1
                     /product="Ly6-C antigen like 1 precursor"
                     /protein_id="NP_001107264.1"
                     /db_xref="GeneID:503162"
                     /db_xref="RGD:1565410"
                     /translation="MNSSCAMKSCVLIFFLALLCAERAQGLTCYNCIAVPLNTTCSTA
                     TCPYSDGVCVSQVVEAVKDSVKGKAKSNLCLPGCPKFPQRTEILGTVVYTKISCCNTD
                     FCNAAGPTGGSTWTMAGVLLFSLGSVLLQTLL"
     exon            230..346
                     /gene="Ly6cl1"
                     /gene_synonym="RGD1565410"
                     /inference="alignment:Splign:2.1.0"
     exon            347..954
                     /gene="Ly6cl1"
                     /gene_synonym="RGD1565410"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgttt tggggtgggg
       61 gatgaatgcc tgagctgcct gggagccctg ggacttgatt ggaagtctat taactggctc
      121 caatttccaa ggttttctct ctgcacccct tctcagagga tgaacagttc ttgtgctatg
      181 aagtcctgtg tgctcatctt tttcctggcc ctactgtgtg cagaaagagc tcagggccta
      241 acgtgctaca attgcatagc tgttccactt aatactacct gctcaacagc tacctgtccc
      301 tactctgatg gagtctgtgt ttctcaggtg gtagaagctg taaaggactc tgtgaaaggg
      361 aaagcaaaga gcaatctatg ccttcccggc tgccccaagt ttcctcaaag aactgagatc
      421 ctgggtactg ttgtctacac gaagatctcc tgttgcaata cagatttttg caatgcagca
      481 ggtcctactg gaggcagcac ctggaccatg gcaggggtgc ttctgttcag cctgggctca
      541 gtcctcctgc agaccttgct gtgatgaccc ttccaaagcc ccgccaccct tgtcctttta
      601 tcctcatgtg taatcactcc ttcctggagc cctctagtga taaattctga gtaatagaaa
      661 ctcagaggtg ggggtagggt gtggaatacc ttttttcaac tctatagctt ctgctgggta
      721 ggtgccccac tcccctctct agggctttca gatctgtact tcttggaatg ccattgtgtt
      781 gtggtttgct gctcctggcc cttgaggcag gtggacagca tggggaagag gcataaaccc
      841 aaggcactgt gccaccacct ctatccatac ataaaaatct ggggtcctac agggttccca
      901 cacatgcctc tcaaggtccc cctatttgag tccaataaac tctctgtcct cccaaaaaaa
      961 aaaaaaaaaa aaaaaaaaaa
//
