LOCUS       XM_039110925            1393 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Ubiquitin-conjugating
            enzyme E2 C (Ubiquitin-protein ligase C) (RGD1565372), mRNA.
ACCESSION   XM_039110925
VERSION     XM_039110925.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110925.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1393
                     /gene="RGD1565372"
                     /note="similar to Ubiquitin-conjugating enzyme E2 C
                     (Ubiquitin-protein ligase C); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 49 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:366307"
                     /db_xref="RGD:1565372"
     CDS             508..951
                     /gene="RGD1565372"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2 C-like"
                     /protein_id="XP_038966853.1"
                     /db_xref="GeneID:366307"
                     /db_xref="RGD:1565372"
                     /translation="MSGDKGFPESGNLFKWVGTTHGAAGTVYEDLRYKLSLEFPSGYP
                     YNAPTVKFLTPCYHPKVDTQGNICMDILKDKWSALYDVRTILLSIQSLLGEPNIESPL
                     NTHGAELWKNPTAFKKYLQETYSKQVSNQEPWRQLSSCLLCRLFS"
ORIGIN      
        1 tccaaagact aaaagcatct atgagaattg actttgcttc tctagatttt aatataactc
       61 taaaagaaca cgtacacaaa aacactttac cattaccttg tccctttttc acaaggttta
      121 ctccccacta tcccagatct ttattttaat ttgcacatgc tttcaattcc catggtgtcc
      181 ttcactgtct cccacttact gaggctacaa attcgtggtg tcattttact caatttgttc
      241 cttctctctg ccggctggct cctgggacga ccttgtcaga aaaattcttc actttcccga
      301 tctccgtggg acctccattt gtaggtccct acgctgacac agtaccgaga accagatcta
      361 gacacatact cagggggggc atcactgcgg aggaggctca gacaagagaa gactggtgag
      421 cataatagtt ctgggagcag aacactgcgg gggcgccgcc cagggccctg tgggcaagag
      481 gctacagcag gagctgatga ccctccgatg tctggtgaca aaggattccc tgaatcaggc
      541 aacctgttca aatgggtagg aaccacccac ggagcggctg gcactgtata tgaagacctg
      601 aggtataaac tctccctaga gttccccagt ggctaccctt acaacgcacc cacagtgaag
      661 ttcctcacac cgtgctacca ccccaaagtg gacacccagg gcaacatctg catggacatc
      721 ctcaaggata agtggtctgc actgtatgat gtcaggacca tcttgctctc catccagagc
      781 ctgctaggag aacccaacat cgagagccct ttgaacacac atggtgcaga gctctggaaa
      841 aaccccacgg catttaagaa gtacctgcaa gaaacctatt caaagcaggt ctccaaccaa
      901 gagccctggc gccagctctc cagctgtctc ttgtgtcgtc tcttttctta gatcgtctct
      961 tttcttagat cgtctgtcct ttctccgtgg tttctgagct gtgctgttgt ttttgtttta
     1021 tttgtttttt tttttaaatt aagtctgctt gaacccttac aatgtatatt aaataaacgc
     1081 acgttggttg tttttgtatt aaaaaaaaaa aactagagat ctcgcatgac gtaagacacg
     1141 caaataatga aaatagtttt gaaaagctaa taacctttgt attctaatca tccttatatc
     1201 tgcatgttta ttaaatttca agttttgcaa tcttcctaca atataatcta acatgacatt
     1261 tttattcatt tccatttgga acaatcttta tcttactaat caaagtccgt gttcatctaa
     1321 aagcattttt cgtttcttta atcttctttt accaaaaatg tctcatgctc acagcctttc
     1381 tatctcattt tgt
//
