LOCUS       NM_001402563            2558 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus tektin 5 like 1 (Tekt5l1), transcript variant 1,
            mRNA.
ACCESSION   NM_001402563 XM_039101399
VERSION     NM_001402563.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 18, 2022 this sequence version replaced XM_039101399.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.8361.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-626               JAXUCZ010000001.1  236117869-236118494 c
            627-817             JAXUCZ010000001.1  236117583-236117773 c
            818-892             JAXUCZ010000001.1  236109354-236109428 c
            893-1026            JAXUCZ010000001.1  236109086-236109219 c
            1027-2558           JAXUCZ010000001.1  236103061-236104592 c
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q52"
     gene            1..2558
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /note="tektin 5 like 1"
                     /db_xref="GeneID:309300"
                     /db_xref="RGD:1565057"
     exon            1..626
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /inference="alignment:Splign:2.1.0"
     exon            627..817
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /inference="alignment:Splign:2.1.0"
     exon            818..892
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1026
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..2558
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /inference="alignment:Splign:2.1.0"
     CDS             1210..2328
                     /gene="Tekt5l1"
                     /gene_synonym="RGD1565057"
                     /note="tektin-5-like"
                     /codon_start=1
                     /product="similar to hypothetical protein FLJ32871"
                     /protein_id="NP_001389492.1"
                     /db_xref="GeneID:309300"
                     /db_xref="RGD:1565057"
                     /translation="MEFLGTIQTASYCGSKKDCDFQGLPPAGQDPMVQECYHQPFHLP
                     RCRSAWRPRVFYKVAPSQTCPDCAGDRRPPTTLPSLRSPFSNRYTQREWDRSNDLLIS
                     VAEASRLRASRMTDDSLRIIHDKDQLIRQMQEGTSRNLGQRLSDIRFWKSGLCHERDM
                     LMAESNSLKILKRRLECAADEADSPLQMALDCLYNPGERLGIDLVYDNLGKNLIREAD
                     LLRYCQDQMRKLAKRIDFQIQNNRDAQHALERDIEDKSCAQSIDERCLNLKNTPDSIN
                     FFRGMEKFEETISDPDTWAKFSNNNIRHAQNMRAKSAQLREEAEHLFETLSDQMWRQF
                     NNINLVCPTAQPGAPHRPTRVQAWGKHQLRPSSCRPVF"
ORIGIN      
        1 cctctggact aagagagaaa gtctggcgct taggtcctgg gaagctaact agggtttctg
       61 ttggttcgga tccgagcggt ccaagggtgt tctgacttgt ccctcttctg tatcaaaact
      121 acagcttctt cgtgcacagg agtctaagtt ggagtcgagg ggggccgttt tagaacgcag
      181 aaccaacttt cctttagctt caaatttccc actacaagac tggtctccaa accctcttac
      241 agcagaggag gacactaaaa ataaaattcc ggagcaagca cgtttgtaaa gaattgaaac
      301 aagtagtaga tatcagagga ctttctgtct cttgaatctt ttagaaccgt gaagatccgt
      361 atgctggctg tctcttttct ttttgagcca aaatgagccc ccatagcccg agaatacatt
      421 taaagagaaa aacccaaaga ttgggaatgt accctagcgc tcacttaaca cagacaagac
      481 cctgatttca gtttctagga ccagggagag agaaacagag acatcgaaga actagaaaag
      541 cctaacttca caacctgcat gtttaacaat caggcttgtt atacgataag acaacagaat
      601 atcaatcttt cacctttgat tgactgcatt cccttgagac aaggtttctc attgagcttg
      661 aagaactgac accaagcctt ctgtctcagt ccacttacag agctggggtc agaggtgcag
      721 gcttgttggg gatttgaact taggtactcg tgcttgctcc gctagtattt ttacctacga
      781 catcatctgc cttagccctg agtggaagac tctaaagaat gtaagctcca cacggtcaca
      841 aatcacttct tagccacacc tgtgttgctc agatctgttg agtacatacg cagaaatacc
      901 caacagaagc aactgaaggg tgaagggatt tattttggtt cagtttcgga ggcaacaacc
      961 atcacgttga accagcccgt ggtggtggtg catgacgctg tgactcctca cctcttggca
     1021 gaacaggctg gggttgtgca cagaaacaaa attagtgttc tagaaaccca tcattgctgg
     1081 attgacacaa agacctttcc cgtgctttat gacacaagca ctgagtcaca gagggcccgc
     1141 ggctcctagc acctgagaag ccctagccgg ttgggctaaa ttttgcccgc gtggggctga
     1201 tggggaaaga tggaatttct tggaaccatt cagacagcga gttactgtgg ctccaagaaa
     1261 gactgtgact tccaggggct gccccctgct gggcaggacc ctatggtaca ggagtgctac
     1321 caccaaccct ttcacctgcc ccggtgccgc tctgcgtgga gacccagagt cttctacaag
     1381 gtcgccccca gccagacatg tccggattgc gcaggcgacc ggcggccgcc caccaccctg
     1441 ccctcgctcc gctccccgtt ctccaatcgc tatacccaac gcgagtggga ccgctccaat
     1501 gatctgctga tcagtgtggc agaggcatcg cggctccggg ccagccggat gacagacgac
     1561 tccctacgga tcatacacga caaggaccag ctgatacgcc agatgcaaga gggaacctcc
     1621 cggaacctgg gccagaggct atcggacatc cgcttctgga agtctgggtt gtgccacgag
     1681 cgggacatgc ttatggcaga atccaacagc ctgaagatcc tgaagaggcg cttggagtgc
     1741 gcggctgatg aggcggacag tcccctgcag atggctctgg actgtctgta caatccaggg
     1801 gaaaggctcg ggattgacct ggtctatgac aacctgggga aaaaccttat ccgggaagca
     1861 gatttactaa gatattgcca agatcagatg agaaaattag ccaaacgaat tgatttccag
     1921 atacaaaata accgagatgc tcagcatgcc ctagagcggg acattgagga caagagctgt
     1981 gcacagtcaa ttgacgagag atgtttaaac ctaaaaaaca cacctgactc catcaacttc
     2041 ttccgtggca tggagaagtt tgaggaaacg atctccgatc ctgatacctg ggccaagttc
     2101 agcaacaaca acatcagaca cgcgcagaac atgcgggcca agtctgccca gctgcgggag
     2161 gaggcggagc acctgttcga gaccttgtca gaccagatgt ggaggcagtt caacaacatc
     2221 aacctggtct gtcctactgc ccaacccgga gctccgcacc gccccaccag agttcaggct
     2281 tggggcaaac accaactacg acctagcagc tgcagacccg ttttctagga aggcagatag
     2341 ataccactca cgagccagca gccgtggttc aatcctgaag gaacctccag gctttttctt
     2401 ttcttcttct tttttttttt tatacacagt cacctttatt agttataccc caggttattt
     2461 ttcttaaaat aatattttac atcactaaag caatagcacc acattaaatt catgcatccc
     2521 taatacatgt gtcttgatcg ttacaggtga taagaaac
//
