LOCUS       XM_039080063            1136 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to HSPC263 (RGD1565010), mRNA.
ACCESSION   XM_039080063
VERSION     XM_039080063.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080063.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1136
                     /gene="RGD1565010"
                     /note="similar to HSPC263; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 4 long SRA reads, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:314660"
                     /db_xref="RGD:1565010"
     CDS             136..945
                     /gene="RGD1565010"
                     /codon_start=1
                     /product="ubiquitin thioesterase OTUB1-like"
                     /protein_id="XP_038935991.1"
                     /db_xref="GeneID:314660"
                     /db_xref="RGD:1565010"
                     /translation="MAAEEPQQQKQEPLGSDSEGVNCLVYDEAIMAQQDQIQQEIAVQ
                     NPLVSERLELSVLYNEYAEDDNIYQQKNLHKKYSYIRKTRPDRNCFYPAFGFSHLEAL
                     LDDSKELQRFKAMSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASF
                     NDQSTSHYLVVYLRLLTSGYLQRKSKFFEHFIEGGQTVKEFCQQEVEPMCKESDHIHI
                     IALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK"
ORIGIN      
        1 cttattcttc aaacacttgg agaaaaactg atattgttaa tttgaaatgc atttgtcaca
       61 gcttaccaaa taatgccttc aacacagtca ctaaactttg tctcatatta aaagctctgt
      121 cttggctgtt taaagatggc ggcagaggaa cctcagcagc agaagcagga gccgctgggc
      181 agcgactccg aaggtgttaa ctgtctagtc tatgatgaag ccattatggc tcagcaagac
      241 cagattcaac aagagattgc tgtgcagaat cctctggtgt cagagcgact ggaactctca
      301 gttctgtata acgagtatgc tgaggatgac aacatctacc aacagaagaa cctccacaaa
      361 aagtactcct acatacggaa gaccaggccc gacaggaact gcttctatcc agcgttcggc
      421 ttctcccact tggaggcact gctcgatgac agcaaggaac tgcagcggtt caaagccatg
      481 tctgccaaga gtaaagagga cctggtgtcc cagggcttca ctgaattcac aattgaggac
      541 ttccacaaca cattcatgga ccttatcgag caggtggaga agcagacctc agtagctgac
      601 ctgctggcct ccttcaatga ccagagcaca tcacactacc ttgtggtcta cctgcgactg
      661 ctcacctcag gctacctgca gcggaagagc aagttcttcg agcatttcat agagggtggc
      721 cagactgtta aggagttctg ccagcaggag gtggaaccca tgtgcaagga gagcgaccac
      781 atccacatca tcgccctggc ccaggccctc agtgtgtcca tccaggtgga gtacatggac
      841 cgcggcgagg gcggcaccac caacccacac gtcttccctg agggctctga gcccaaggtc
      901 tacctgctct accgacctgg acactacgat atcctctaca aatgaccggc tggcctaccg
      961 tgccctgcct gcctcccctg ccaggcacta gacatgtaca gagggttttt tcttttcttt
     1021 ttttttttcg ttgttttctt ttttgtgtgt gtgtggttgt aaatggtcat atttcactcc
     1081 tcccttttcc tgtcatagaa ccttccatgt tttattaaag gaaatgctgg tggtga
//
