LOCUS       XM_039096375            6288 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to isopentenyl-diphosphate
            delta isomerase 2 (RGD1564999), mRNA.
ACCESSION   XM_039096375
VERSION     XM_039096375.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6288
                     /gene="RGD1564999"
                     /note="similar to isopentenyl-diphosphate delta isomerase
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 95% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:689872"
                     /db_xref="RGD:1564999"
     CDS             4353..5036
                     /gene="RGD1564999"
                     /codon_start=1
                     /product="isopentenyl-diphosphate delta-isomerase 2-like"
                     /protein_id="XP_038952303.1"
                     /db_xref="GeneID:689872"
                     /db_xref="RGD:1564999"
                     /translation="MSDVTVDWIDKHQLQRLDEMLIVVDENDKVIGADTKRNCHQNKN
                     IEKGLLHRAFSVVLFNSEKKVLIQRRADTKLTFPGYYTDSCYSHPLSNPEEMEEKDAL
                     GVKRAALRRLQAELGIPQDQVSLEDIVFMKRYHYKAKSDAVWGEHEVCYLLLIKKDVK
                     ICPDPSEVSSFSYLTREELEELLERGARGEVQVTPWLRFVVEQFLYAWWPYLDEATRF
                     IELDKIYRV"
ORIGIN      
        1 cacgtgctcc actatgttca tagcagcctt atttataata gccagaagct ggaaagaatc
       61 ctctaattct ttttaaccca gtctttttgc agttcttaat ctttctttca aacattttat
      121 tatcatgtta tatgtgaggg tgttttgcct acatggctgt ctatgaacta catgcaccca
      181 agtgcctgtg agggtcagag aagagcatca gattccctgg aactgagtta cagatacttg
      241 tgagacaaaa tgtgggtgtg agaatcgaac ccaggtcttc gggaagaaca accccgagtt
      301 ttatccacta aaatttcact ctcccaccga ttgcttttct tctagccccg tctttcttga
      361 tctccccttg atagctcata ctctttctgc tgcttctagt ttgtctccat ataatataac
      421 aatctttcct agtaatcgtc tgattttatt aatcctcttc taaggctttc ctgtgtacca
      481 tcttggttat gaactgcaac tctgaaaacc ataacagtgg aaatcttgca cagtggtaga
      541 gccttagtga ggcccagggt tcccttcagc aatgaaaaaa aaagttgtga aaactgtttt
      601 aggaaaattc tttgtattct tcaaccatga tctctgcccc ccatctcttt ctttcttctt
      661 ccttctgtat ctgtctcttc acccttctct cctctcattc tttctcttca tgacttgtat
      721 ttctgttctc tacgtatcag atccctattc ctccactaac ccagtgacaa cattccctgt
      781 cttatcccct ggagcatgtt gaaaagggat agagaatact gagtgaatta agcacattct
      841 gtgcttaatt tgggagagct ggttctacag gttatgagcc accatagggt gatgggaact
      901 gaacctgggt cctttcccag agaagtaatc tctcttaact gctgaatcat ctctccaacc
      961 ccattttaaa tggttttttt accttttcat ctttaaaatg aagggcaata aatttcataa
     1021 cgcagcactt aaaaacaata atgcaccatt taaagacatg aggttctttg ttttgtcctt
     1081 ttgaaaagag atttatctat ctttatttta ttgtatctat gagtgcccac gtgtatgaat
     1141 gggcactgta tgcagaagtg cccgtggagg ccagaagagg gtatcagata tcctaacctg
     1201 gactttgatg gttgagagaa gccatagggg gtgccaggga actgaatctg agtcctctac
     1261 gaaagcaaca agtgcgtcca tcttaccacc atcctctttt gtcctgttta tgacagtgcc
     1321 tcactatgta ggctacgtta gtcttgaatt cctgatcctc ctgcttcacc ttctggagtg
     1381 ttggagtaac aggtgtattc cactgaacca ggcttgtcag tgatggcaat gccagtgaat
     1441 tatacaagct ataatatgaa actttctgac attacttact aaattatctc acggcatcat
     1501 tttcctattg ttttgaagta tagacatatg tttagtgttg gttgtagcac ctataaaatg
     1561 tcatctatgg cttcagcttt tgtcaatggt ctattacctg gtcccaaaca cagatatttc
     1621 atgaactctt gaaaatactt ctcttggtag gatgttgagt tttatttaca aaaaaaattc
     1681 taacttctat tctgctctca ttgtttcttt cttatgtttt tatttatttt tttctccttt
     1741 ttcttttttt ttttttcgga gctggggact gaacccaggg ccttgcgctt gctaggcaag
     1801 cgctctacca ctgagctaaa tccccaaccc cttatgtttt tattttaagc tgggcagtct
     1861 tttagaaact gagtgataaa gccctctcat cagctaacag gaattataag tacgttactt
     1921 ttaagtgagg gttaacttta tgtgggaact tacaacacta acctcaagta ggaattaata
     1981 ttatttcttt gcgtatctat gaaatggtta acctatcaac ttgaagaaat tgaaaatcac
     2041 ctatgagaca cacctctggg cagctcttgg acgagagttc cagactgaat taagaggggt
     2101 gggggcgata gaaagacagc tgaattcctc tttgtccctt tgttttgttt gtggtgtaac
     2161 cagctgcctc actttcctgt ccactcattt aaactccttt gtcaccccac cttcctagca
     2221 tcacgggcag cctcctcaaa ctgtgagcta aataaacatt ctttctttaa ttttctttcg
     2281 tcagtcattt tctcatagag acgagagatt ttcgagggag ttcctggaag agattagcac
     2341 tggatttgta gattaagtgg gagaggtgtc cctgacaccg ggctggccac tgtccattct
     2401 tcagaaggcc tgcctagaat aaaagggagg aggagaagcc catgtctcca ctgcactgag
     2461 aatttggtcg actgccctcc gacggaagag atctcccttc agcaggtttc tttatattta
     2521 aatcatatat ttatgctctt ctgtgatctc ctactatgca catttttatt gtagaacaag
     2581 aacttctgat aacgtgatag gactataatg tgtcaggaag ataaaatttt gcatatttat
     2641 ttgtcctgtt ctttgtgcat gtctttcccg aggtagatac ttactagtgg ttcagttgtg
     2701 tcttgaaatg tgtgctatta tattagtatc tagaaaggat ttttctaaga gaatcttact
     2761 taccctgttc atgaatgtat ttttctagct cttttatact tcctttgttt tttataattt
     2821 tgccctgtcc catggcacta gagatagttg atgcctggaa catttgttta agggttgaag
     2881 aaaagaagaa gagaacagat tgcacaagga aggcgacagg ataaagtgag acacagagag
     2941 actagggcaa ggcttcttgt tcaaaacacc aagacttgga ggcctcctaa ctgtggccct
     3001 ttcacacccg aaggtcccag gtcagcctgg acatcaccgc cacaatttcc aatagcaagg
     3061 agtgattagt atctttcact ctagaaagtc ctttgctgag gaagtcgtca atatactttt
     3121 taaattcttc ctccccaccc ctcttggatt tttgctccat cccatgctct gagatctagc
     3181 taagcagcct cttccccgag acaatgattt tgtagggaaa taagaggatg aggatggaca
     3241 gcagaagtga attacaaagt ctttaatgtg actgtttgct tctcttacta acatacgttt
     3301 actgtataca atattgggtc tcactctgac attttctata cctacataag gaattgactg
     3361 tatttaccct cccccttcat atttctttaa agagggcaaa agccgggcat agggacccgt
     3421 gccaaactta ctggtcctta ggaggctttt gcagaaggct aatgaattaa attgatccca
     3481 acttggatta catagaaaaa ctgtcttgga ctcacaaaca agaggggaaa gaaaatagaa
     3541 acacttggtc aaaacaattg ttactgacaa tatgttctta gaaaatccat ctggacactg
     3601 tcaaggtttg tatatgctcg ggcgagggag cagcactatt aggaggtgag gtcctgttac
     3661 aggtgtgtca ctgtgggtgt gggttttaag accctcaccc cagctgcctg gaatctagta
     3721 tcctgctacc atcttcagat gaagatgaag agctctcagc tcctcctgca ccatgcctgc
     3781 ctggatgctg ccatgttccc gccttgatga taatggactg aacctctgaa cctgtaaggc
     3841 agccccaatt aaatgttgtc cttacaagac ttgccttggt catggtgtct gttcacagca
     3901 gtaaaaccct aactaagaca gacactaaga gggagacact agcctttcta tgggtgaaca
     3961 tgactttctg gaaagactat atagaatgtc tccaggtttg ttccaaccgc caggccttca
     4021 ttttgaaata tgtcacaaac agcattacat gtacttttcc tcggcattca ttcattttgt
     4081 ggagatttac ctttgggtca tctttgaaaa gactcaaggg aacttgagga ctatgttctc
     4141 actcagacag tcatcaagag gttctctaca gaaatataca agtggaaaca cacatgccct
     4201 gttggtacct aacaacgcta ttgcgtccgt atatagtgtt ttttgtcatt gagggatgaa
     4261 ggtgtgtgat gaccttggag gtgtctgata acaaatagca aaacagtaga tggtgctact
     4321 cttttacaca ggtcggatca cagctagcag acatgtctga tgtcactgtt gactggatcg
     4381 ataaacacca gctgcagcgt ttagatgaga tgctgattgt tgttgatgaa aacgataagg
     4441 tcattggtgc agacactaag aggaactgcc atcagaataa aaacattgag aaagggctgc
     4501 tgcaccgagc cttcagtgtc gttttgttca actcagagaa gaaagttctg attcagcgcc
     4561 gagcagacac gaagcttacc ttccctgggt actataccga ttcctgttat agtcatccac
     4621 tgagtaatcc tgaagaaatg gaggagaagg acgccttggg agtgaagagg gcagccctga
     4681 gacggctgca ggctgagctg ggcatccccc aggaccaggt ttctctagag gacatcgtgt
     4741 ttatgaaaag gtatcattat aaggcaaaat ctgatgcagt ctggggagaa cacgaagttt
     4801 gttaccttct gcttatcaag aaagacgtca agatctgtcc agatccgagt gaagtcagta
     4861 gcttcagcta cctgactcga gaagaactgg aagagcttct agaaaggggg gcccggggtg
     4921 aagtccaagt gaccccctgg ctgagattcg tcgtggagca gttcctgtat gcatggtggc
     4981 cttacttaga tgaagcgacc cggttcatag agcttgacaa gatatacaga gtatgaggaa
     5041 ccggaaataa gacactggct gtgaggatgc cccagttcag cactgagctc agggcagacc
     5101 cacagctcag atgttagcta tgcacccgga ccaaaacagg gaaaggactc ctcttttcca
     5161 gaaagccaaa aatcattatc attaactctg aatcttcttt tcttttcttt cttgacacag
     5221 agctatgtat cccagaccag cctcaaactt ctcgtgtagc caaggatgac tttgaatttc
     5281 tgatcctcct gcctccacct cccctggtcc ttggattcca ggcacacacc agtatgcctg
     5341 ctcagtgctg gaggctgaac ctgcagcttc acgtacagcg cgcaaacatg ctaccaacaa
     5401 ccaatcccat cccgtggttt cttgcctttt ttcccctagt tgcttcattt ctttattttc
     5461 aactgcctcg gtgtgggaaa gaaatgtatt gttttcccca aattagaaac agaggaacta
     5521 aagaagaaaa gatcccctaa agatagagtc gatgtcaacg ctgtaagaac tgaagttaca
     5581 caaccacctg aggcagccct tgaatggcgg gcatgccagt cctctcaaag gcctgaggct
     5641 ttgtgtggag gaaaccgtaa gaacattaaa tccagaataa tctgttaagc acccaaattt
     5701 ggcaagacta gagtacctag ctaatactta acttgtatcc tgctctgact tgcagccact
     5761 ggatagataa cctgtccgct gggagcctct ggcttcactg ctatgctaac tatttgtata
     5821 gaacacagtc acgcagtcaa gctcaaatca gttgggtaaa tgagtgaaca gtcatttaaa
     5881 taaatataat tttttaaagt agttgatttg acaaagtgtt tttgatgtcc tcaaaagaac
     5941 actttgaact caagtctcta gccagctgtt tcgattttct tatggaggag agaacaccat
     6001 ttatgaaaaa aataatacgg attttactgt ttggagtgat gccctttaag ccctccattg
     6061 ttgatgctat tattatggtt agaattaagt atgactgggt tcatggagaa tccccagcga
     6121 gctgcagagg actaatacaa atctgtggtc aggatgaatg atacgataaa gctctcctgc
     6181 tgactaataa tatgacaaac ctgtgacctt tctgacatcc tgtcaacatc agccgactcc
     6241 ctgaccacat gaatactgtg tccttggcct acataaacgt ttcacact
//
