LOCUS       XM_039100314            2578 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to fibrous sheath interacting
            protein 2 (RGD1564955), transcript variant X6, mRNA.
ACCESSION   XM_039100314
VERSION     XM_039100314.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100314.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2578
                     /gene="RGD1564955"
                     /note="similar to fibrous sheath interacting protein 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein, and 91% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:501642"
                     /db_xref="RGD:1564955"
     CDS             196..2163
                     /gene="RGD1564955"
                     /codon_start=1
                     /product="fibrous sheath-interacting protein 2 isoform X5"
                     /protein_id="XP_038956242.1"
                     /db_xref="GeneID:501642"
                     /db_xref="RGD:1564955"
                     /translation="MDLYLSNCLKAAEAAASKAASGNLTNNKDTCSSKKQKPIIPKIG
                     PASLLDLPLGAKLPIIPGSTNIFYTTNISEKLYQPSFDFNLNDPYCKLMETTYKSLHD
                     PHLKSYFKRKDILKKLRKGGYITGNNKVVCSLKELNKYRQYLTTLKIDFERNYIREQK
                     IIENQVNKLNEERRACDNAAAAEFQQWLLQEGKKASPHHNHLIKLRHLNMINKELDKI
                     EDTLERRSTVQMKEEDRQHWDEVRKKLSLRQQIEEEWQFKEMSLLTKIGDEVRRETKV
                     EEHHRKIREEINRKKQAMLQKRIAYHLQRLQRKDSIEEKQEASVPETRRQTETASSTT
                     QKQPSLTEEKKYEEHLEQKPSTSSILTSTSERLMQELRESKSSSQMTRISFDEDRSSI
                     YELLETRFSPADTRRSSLPEDHTYQEDLEPKYYHHPSGKKTSFAEEALFYEHNEQRYG
                     PSTSKRTSFVNEKFIEELLEAKYLYQNTKRTSFTDQKLMDDNLEPILVTSSNERTSVS
                     DHRLVYDHIKPKSASPSIKKTSFAEEKSFQQLMEAITPPQYIKKTSFADQKSSQESLE
                     SKRSSHHSQNSIKVFVKTSLSPQQRDIQNTELKYDKGTTHHSYNRGIKRIPNPAPSHS
                     LQSTVLSRQSHDIPTQAIDPSLQQNTHKQSK"
ORIGIN      
        1 gtggccttga ggacatctac tgagaacgcc agcaaatcag cattgtgatg tgtgcatcct
       61 tgaggtcctg ttacccaggt gtctagggcc ttggctcagt cttgttcagg acattggagg
      121 agacggtcac agaaagggag acctgaagac agtttgctac cccaggccgc agcccttagg
      181 ggctgctggg tagctatgga cttgtaccta agcaactgtt taaaggctgc tgaagctgct
      241 gcctctaaag cggcttccgg caacctaaca aacaacaaag acacatgtag ttctaaaaaa
      301 cagaaaccta tcattccaaa gattggacca gctagtctat tagatttgcc tcttggggcc
      361 aaactgccta ttatcccagg aagtactaat atattctaca caacaaatat aagtgaaaag
      421 ctttaccagc cttctttcga ttttaacctt aatgacccat attgtaaact catggaaacc
      481 acctacaaaa gtcttcatga tccacactta aaatcatact tcaaacgaaa agacattctc
      541 aagaaactaa gaaagggagg atacatcacc ggcaataata aagttgtatg ttcattaaaa
      601 gagctcaaca aatacagaca atatcttacc actttaaaaa ttgactttga acgaaattat
      661 ataagagaac aaaaaataat agaaaatcaa gtaaacaaac tgaacgaaga gagacgggcc
      721 tgtgacaacg ctgctgctgc tgagtttcag cagtggttgt tacaagaagg gaaaaaagcc
      781 agccctcatc acaaccactt aattaaactc agacatttaa atatgattaa taaagaacta
      841 gacaaaattg aggacacctt ggaaagacga agtacagtac agatgaagga agaagacaga
      901 caacattggg atgaggttag aaaaaaactg agtctacgtc aacaaattga agaggaatgg
      961 caattcaagg agatgtcact tctgacaaag atcggagatg aagtaaggag agaaacaaag
     1021 gttgaagaac atcaccggaa aatcagagag gaaattaacc gaaagaaaca agcaatgctt
     1081 cagaaaagaa ttgcctacca tttacaaaga cttcaaagga aagatagtat agaagaaaag
     1141 caggaagcaa gtgtccctga aactagaaga caaactgaaa cagcttcttc aacaactcaa
     1201 aagcagccaa gtctcacaga ggagaagaaa tatgaagaac atctggaaca aaaaccatct
     1261 acatcaagta tactgacaag cacctctgag agactgatgc aagaattgag ggaatcaaaa
     1321 tcttcatcac aaatgacaag aatcagtttt gatgaggaca gatcttcaat ttacgaacta
     1381 ttggaaacaa gattttctcc agcagataca aggagatcga gtttgcctga ggatcataca
     1441 tatcaagaag atttggaacc taaatattat caccatccca gtgggaagaa aacaagtttc
     1501 gctgaggagg cattgtttta tgaacataat gaacaaagat acggtccatc aaccagcaaa
     1561 agaacgagtt ttgttaatga gaaattcata gaagaacttc tagaagcaaa atatctttat
     1621 caaaatacta aaagaacaag tttcaccgac cagaaactga tggacgacaa tctagaacca
     1681 attttggtga cttcatcaaa tgaaagaaca agtgtttcag accacagatt ggtttatgac
     1741 catatcaaac caaaatcagc atcgccaagt ataaagaaaa caagttttgc tgaggagaaa
     1801 tcatttcaac aacttatgga agcaataaca cctccacagt acataaagaa aacaagtttc
     1861 gctgaccaga aatcatctca agaatctctg gaatccaaac gatcaagcca tcattctcaa
     1921 aatagtatca aggtttttgt taagacaagt ttatcacctc aacagaggga tatacaaaat
     1981 acagaactta agtatgataa aggaacaaca catcattcat ataacagagg catcaaaaga
     2041 atcccaaatc ctgctccatc tcactctctg caatcaacag tactttccag acaatcacat
     2101 gatattccaa cacaagcgat agatccttct ttacaacaaa acacacataa acagagcaag
     2161 tgatttacgg aatgatggcc aagattaatg taaaaatttc attgattaaa tgacaatttt
     2221 aaaaacctcg attcctggca tgtgtgaatt ctagaaatag ggttgcaaaa cttctgtctg
     2281 tgggcactca ctgctcccat ggacagtctc agcacatgag gactgccacc aaacatctga
     2341 atgcaatgag ctttgggttt taactttgtt gggcagaact gaattgggac actatatttg
     2401 ccttcttttt gcatttggtt gtactgacga ttgactctag catcttgtat acacaaggaa
     2461 agcactgatc tacatactcc cagttattct ttttattttg aattgtggtc ctattaagtt
     2521 attcctgcta gcctcaatca ctactatatg gctcagtcag gcctaacctc ccacaagt
//
