LOCUS       NM_001402532            1351 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus cathepsin M like 1 (Ctsml1), mRNA.
ACCESSION   NM_001402532 XM_017600679
VERSION     NM_001402532.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Mar 17, 2022 this sequence version replaced XM_017600679.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN06680412, SAMN06680414
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                JAXUCZ010000017.1  3765594-3765657     c
            65-192              JAXUCZ010000017.1  3761568-3761695     c
            193-315             JAXUCZ010000017.1  3761106-3761228     c
            316-462             JAXUCZ010000017.1  3760866-3761012     c
            463-687             JAXUCZ010000017.1  3760224-3760448     c
            688-850             JAXUCZ010000017.1  3759701-3759863     c
            851-968             JAXUCZ010000017.1  3759012-3759129     c
            969-1351            JAXUCZ010000017.1  3757611-3757993     c
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1351
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /note="cathepsin M like 1"
                     /db_xref="GeneID:498689"
                     /db_xref="RGD:1564827"
     exon            1..64
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     exon            65..192
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..1068
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /note="cathepsin M-like"
                     /codon_start=1
                     /product="cathepsin M like 1 precursor"
                     /protein_id="NP_001389461.1"
                     /db_xref="GeneID:498689"
                     /db_xref="RGD:1564827"
                     /translation="MTPAVLLAILCLRLISSSPAPDPVLDAEWQKWKIKYEKTYSLEE
                     EGQKRAVWEQNMKKIKLHNGENGLGKHGFTMEMNAFGDMTIEEFRKLMIEIPIPTVKK
                     ENSVQKRQAVNVPNFINWRKRGYVTPVRRQGRCNACWAFSVAGAIEGQMFRKTGQLIP
                     LSVQNLVDCSRTQGNLGCYLGNTYFALQYVKENGGLESEATYPYEGKEGSCRYHPDNS
                     TASIAGIEFVPKNEHALMNAVATLGPISVAIDARHESFLFYRNGIYHEPNCNSSVVTH
                     SMLLVGYGFVGEESDGRKYWIVKNSMGNKWGNRGYMKIAKDQGNHCGIATYALYPRV"
     exon            193..315
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     exon            316..462
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     exon            463..687
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     exon            688..850
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     exon            851..968
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1351
                     /gene="Ctsml1"
                     /gene_synonym="Ctcml1; RGD1564827"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtacaccag ggcagctgca gtcaccaccg gtgaggtcct gcatccacaa gggcagaaaa
       61 gtaaatatga ctcctgctgt gttgctggcc atcctgtgct tgagactgat ctcatcttca
      121 ccagcacctg atcccgtttt ggatgctgaa tggcagaaat ggaaaataaa atatgaaaaa
      181 acatacagcc tggaggaaga aggacagaag agagcagtat gggaacaaaa tatgaaaaag
      241 atcaaattgc acaatgggga gaatggccta gggaagcatg gtttcaccat ggaaatgaat
      301 gcctttggtg acatgacaat tgaagaattc aggaaattaa tgattgaaat cccaatccca
      361 actgtcaaaa aagagaacag tgtacagaaa cgtcaggctg ttaacgtgcc caactttata
      421 aactggagga agagaggcta tgttacccct gtgcggagac agggaagatg taatgcttgt
      481 tgggcttttt ctgtggctgg tgccatagaa ggacagatgt tccggaaaac aggtcaactg
      541 atccctctga gtgtacagaa cctggtggac tgctctagaa ctcaaggcaa cctgggctgt
      601 tatttaggca atacatactt tgcattgcag tatgtgaagg aaaatggagg tctggaatct
      661 gaggcaactt atccatatga aggaaaggaa ggatcctgca ggtaccatcc agataattct
      721 actgctagta tcgcaggcat tgagtttgtc ccaaagaatg agcatgcatt aatgaatgct
      781 gtggcgacac tagggcccat ttctgttgca attgatgcaa ggcatgaatc cttcttgttc
      841 tatagaaacg gtatatatca cgagccaaac tgcaatagtt ctgttgtcac acattctatg
      901 ttactggttg gctatggctt tgtaggagaa gaatcagatg gcaggaagta ttggattgtc
      961 aagaacagca tgggaaataa atggggcaac agaggctata tgaagattgc caaagaccag
     1021 ggtaaccact gtggaattgc tacgtatgcc ctttatccaa gggtgtgaat tgcctggtgg
     1081 tgacaaggaa ggaaagaaca gaagacaaca tgtagagaag aggcacttcc atttccaatc
     1141 agctggccat tcctgtgtat gtaagacact gcagtcattg gaaggccagt tgtgatgtga
     1201 atgttgtgat atatttacta ttgtaagaca tgaccactac tgtaactgat gccatacatt
     1261 ggtttgtatt tgttttctat aacagtgtta tttttatttt tcctgtaaga aatcaaatct
     1321 ttaaaaataa agctttcttt caatgttgct c
//
