LOCUS       NM_001194985            1554 bp    mRNA    linear   ROD 18-JUN-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2, member M (Clec2m),
            mRNA.
ACCESSION   NM_001194985 XR_085823 XR_086243
VERSION     NM_001194985.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Flornes,L.M., Nylenna,O., Saether,P.C., Daws,M.R., Dissen,E. and
            Fossum,S.
  TITLE     The complete inventory of receptors encoded by the rat natural
            killer cell gene complex
  JOURNAL   Immunogenetics 62 (8), 521-530 (2010)
   PUBMED   20544345
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Oct 14, 2022 this sequence version replaced NM_001194985.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158621.1, CV126906.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-266               JAXUCZ010000004.1  164465671-164465936 c
            267-353             JAXUCZ010000004.1  164465107-164465193 c
            354-541             JAXUCZ010000004.1  164460101-164460288 c
            542-651             JAXUCZ010000004.1  164459044-164459153 c
            652-1554            JAXUCZ010000004.1  164455031-164455933 c
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1554
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /note="C-type lectin domain family 2, member M"
                     /db_xref="GeneID:500335"
                     /db_xref="RGD:1564770"
     exon            1..266
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /inference="alignment:Splign:2.1.0"
     CDS             209..766
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /note="C-type lectin domain family 2, member M like 1"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member M"
                     /protein_id="NP_001181914.1"
                     /db_xref="GeneID:500335"
                     /db_xref="RGD:1564770"
                     /translation="MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFS
                     FPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATL
                     AVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFL
                     HKSGIDSTNCNDLKEYICTQEGHCP"
     exon            267..353
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /inference="alignment:Splign:2.1.0"
     exon            354..541
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /inference="alignment:Splign:2.1.0"
     exon            542..651
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /inference="alignment:Splign:2.1.0"
     exon            652..1554
                     /gene="Clec2m"
                     /gene_synonym="Clec2ml1; RGD1564770"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccagtgag atgtcctgtg gcccaccatg cagaacaatc acgctggagt ggtgctacct
       61 cacccatctc tcaatcttac tctagccttg atcccaaaga aacccagccc tccgaatcca
      121 gagctttgag gacaacagat ataagtatca gttctccttc cctcctaaga attttctcaa
      181 cctctgtagt cactgaagcg ccatttatat gcagaccgaa agctccctca gactatctca
      241 gtcaagccac caccggttaa cattcgattt aaagaaagtg gtgacccttt ggatcctggt
      301 aattggtgtt attgctgttc ttctttgggg gtttttcagt tttcctaaaa aatttacagt
      361 tacaagacaa accaaaaacg aggtgtgcag cgatggagta aagatttgcc ttcatggctg
      421 gaacaaatta aatcggaact gcttcactca tttctcacat gcaaattcat ggttcactgc
      481 caaagagacc tgcaaattcc acgatgcaac tcttgctgtg ttcaacgacc agactgaatt
      541 ggatattgta atgaagcaaa tggaggatat acaaacattt tggattggac tgtacaaaaa
      601 agattttcgc ggaccctggg tttggacaaa tggaagtaaa tacaataatt ggtatgaagt
      661 ccaagactat ggtcattgtg ccttcctgca taaaagtggc atagacagta ccaactgtaa
      721 tgatctaaaa gaatatattt gcacccaaga aggccattgc ccttgaagat ttcttccatc
      781 caaaagaaca tgaagagcag tgtcttgctt tgtccatgat gtgtaattct tctgactgac
      841 atctcttcaa atctaattgg actgataaac ttttacatga attttatctt cattgaaata
      901 gttactaaga agccagcaat taaactaagt ttgatgtggt gctgctggat catccaggtt
      961 ggtgcatttg aagatgtggc catggaggac cttactcaga agtgcttcat gtcagtggag
     1021 cacactgggg ggcataaaga ataaagagaa agatccctct gcttgtctaa aattcattga
     1081 catcttcaga aaagaaaaag aagagttgca ggacagggtg agcataagaa atgttttgtt
     1141 tgtcctcaaa taatacatga tttgtgtgaa actgaaggaa ggcataaggg gtaaactatt
     1201 ctgattgagg accctgtgtc accactgagg accaggcaac actccatatg tctctagacc
     1261 tttggtcaag ctgccaaact gaaagactta aggtaacctg aatttgtagt tgccatagtt
     1321 gctgaaagag tgaaggatgc aagttttgca atgagtcagg gtgagcagaa tgtgagcacc
     1381 cagaggtaga gaggaacatg aagaaagaag ctttgtgacc ttgaagaatc catggagatt
     1441 agcctgaatt ccaaaaactg ttccactcag attctggata acactgaaat gatcatgaag
     1501 acaggagggc acaaacatca atactggtca tcattaaaaa aacaatctct tcaa
//
