LOCUS       XM_039096389            1343 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to cathepsin 1 precursor
            (RGD1564657), mRNA.
ACCESSION   XM_039096389
VERSION     XM_039096389.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096389.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1343
                     /gene="RGD1564657"
                     /note="similar to cathepsin 1 precursor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 17 Proteins"
                     /db_xref="GeneID:306718"
                     /db_xref="RGD:1564657"
     CDS             63..1058
                     /gene="RGD1564657"
                     /codon_start=1
                     /product="cathepsin 7-like"
                     /protein_id="XP_038952317.1"
                     /db_xref="GeneID:306718"
                     /db_xref="RGD:1564657"
                     /translation="MTPAVFLVILWLGVTLAAPTPDYNLDAEWEKWKRSNEKTYSPEE
                     EEQRRALWEENVKMIKQHTVENGLWMNNFTIEMNQFCDMTDEEMRMMIDSSAPTLRKE
                     KRVQKRNVEIPKTLDWRKDGYVTPVRRQGACGACWGFAVAGSIEGQLFKKTGKLSPLS
                     VQNLVDCSRSFGTMGCNGGRIYNAFQYVKNNGGLEAEATYPYEAKEGNCRYRPEKSVV
                     KVTRFLVVPRNEEALINALVNIGPIAVGIDAQHESFKKYAGGIYHEPNCKRDSPNHSM
                     LLVGFGYEGQESEGRKYWLVKNSYGEQWGEKGYMKIPRGQNNYCGIASYAMYPVL"
ORIGIN      
        1 gcaacctctg aagaactctg gagtacacca aggcagcggt aataaccaca ggtgcttgag
       61 acatgactcc tgcagtcttt ctggttatcc tatggttggg agtgaccttg gctgctccaa
      121 cacctgatta caatttggat gctgaatggg agaagtggaa gagaagcaat gagaaaacat
      181 atagtccaga agaagaagaa cagaggagag cattgtggga agaaaacgtg aaaatgatca
      241 aacagcacac tgtggagaat ggcctgtgga tgaacaactt caccatagaa atgaatcagt
      301 tttgtgacat gactgatgaa gaaatgagaa tgatgataga tagttcagcc ccgactctaa
      361 gaaaggagaa acgtgtccag aaacgcaatg ttgaaattcc caaaaccttg gattggagaa
      421 aagatgggta tgtgactcct gtgcgaagac agggagcatg tggtgcatgt tggggttttg
      481 ctgtggctgg ttccatagaa ggacagctgt tcaaaaaaac aggcaaattg tctccactga
      541 gcgttcagaa cctagtggac tgttctagat cctttggcac tatgggatgt aatggaggca
      601 ggatttataa tgccttccaa tatgtgaaga acaatggagg tctggaggca gaggcaacct
      661 atccatatga agcaaaggaa ggaaactgca ggtaccgtcc tgaaaagtct gttgttaagg
      721 tcactcgctt tttggttgtc ccaaggaatg aagaagccct aatcaatgct ctagtaaata
      781 ttggacccat tgctgttgga attgatgctc aacatgaatc ttttaaaaaa tatgcaggag
      841 gtatatatca tgagccaaac tgcaaacgtg attctcccaa ccattctatg ctattggttg
      901 gctttggtta tgaaggtcaa gagtcagagg gcagaaaata ttggttggta aaaaacagct
      961 atggtgaaca atggggtgaa aaaggctaca tgaagattcc cagaggtcag aacaactact
     1021 gcggaattgc ttcttatgcc atgtaccctg tattgtgagc tgcctggaga taacagtgta
     1081 ggaaaaggca acacatccag aacagactca tagtcctcaa agtggtgatt ctactgtgcg
     1141 tagaaaacac gtgaatcatt agaaaggcag ggtaagatgt tagttctgtg ttatgattac
     1201 tctagtaaga tatggctgct ggtgtaattg atgctttgca ttggtttgta ttaagaaatt
     1261 ttggaatcac ttgattttaa gttttcattg taccaaacaa tgttttaagc aatgaaagtt
     1321 aaattaaaat gtaggatcta cca
//
