LOCUS       XM_221808               1542 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to DC-SIGN (RGD1564571), mRNA.
ACCESSION   XM_221808
VERSION     XM_221808.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_221808.10.
            
            On Jan 21, 2021 this sequence version replaced XM_221808.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1542
                     /gene="RGD1564571"
                     /note="similar to DC-SIGN; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 13 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:304197"
                     /db_xref="RGD:1564571"
     CDS             103..726
                     /gene="RGD1564571"
                     /codon_start=1
                     /product="CD209 antigen-like protein E"
                     /protein_id="XP_221808.5"
                     /db_xref="GeneID:304197"
                     /db_xref="RGD:1564571"
                     /translation="MRVFNRERKKHLHSLGCQDHEYFITVLQLISIVLLAALLTAILV
                     KGSEVPSSQEHDQQKQRMHQKLDQLKTGLDHLCRPCPWDWTFFQGNCYFFSTFQKKWK
                     ESVIACKDMGAQLVVIKSYEEQSFLQRTSKMKGNTWIGLSDSQEEDQWLWVDGSPLQW
                     RNYWSAGEPNNLYDEDCVEFSSYGWNDISCSFEKFWICKKSASPCPR"
ORIGIN      
        1 tttctcttcc tggttgagaa tagattcgag gagtgagaaa agtttgtggc aaagaaaaac
       61 tgtggttacc agagtcctgc acacttgtgg acagcggtga ccatgagagt cttcaacaga
      121 gagaggaaga aacatctgca ctccttgggg tgtcaggacc atgaatattt catcactgtg
      181 ctgcagctca tctccattgt gctcttggct gctctcctca cggctatcct tgtcaaaggc
      241 tctgaggttc ctagttccca agagcatgat cagcaaaagc aacgcatgca ccagaaactg
      301 gaccagctga agactggact agaccacctg tgccgcccct gcccctggga ctggacgttc
      361 tttcaaggaa actgttactt tttctctact ttccaaaaga aatggaagga atctgtcatt
      421 gcctgcaagg acatgggggc ccaactagtg gtcataaaaa gttatgagga gcagagcttc
      481 ctccagagga cttctaagat gaaaggcaat acctggatag ggctgtcaga ctcacaagag
      541 gaagaccaat ggctgtgggt agatggctca ccactgcagt ggaggaacta ttggtctgca
      601 ggggagccca acaatttgta cgatgaagac tgtgtggaat tttcaagtta tggatggaat
      661 gatatctcat gttcctttga gaagttctgg atctgtaaga agtctgcatc tccttgccct
      721 aggtgaaacc tgatcatctc catagccctt gtatgtccaa cctatttatc ttttaattga
      781 actttaagta cactcatttc agtttcttct gcctttctgt gagcattggg atctcaataa
      841 tagattgaag tacttttcta cacaccttgt ctgtgaaggc ttggtccact gttgttcccc
      901 accctgcatc tacagattct ttaaaagaga ttgtgattcc cccacacaca cctattttca
      961 gctttcttcc agaattaagt ctggattgtt caccacttgt gtaggtttgg ctgagaatgt
     1021 ctttcataga cttgcatagt tgtataattg atactagtag gtgagggctg tttgaggaag
     1081 ctatgaaacc tttagcacaa gtaattctca atccgagggt tgcaaaccct ttggtgctga
     1141 tatgccagat attgtgcata tcagatattt acatcactat tcttaacagc agcaaaaata
     1201 cagttatgaa gtagccatga aataatttta tggttgggat gatcacaaca ttgagttgta
     1261 ttaatgggtc acagcactag gaaggttaca aaccatctcc ttactaggca gatccttgaa
     1321 agagaaaaca gatgactggg tgtggggttt caagttttat actcttgcct cacttgcact
     1381 tctcattctg acacctgacc tcctgtgtgt agatgaaaat atgaccagcc aactttctgc
     1441 ttctgctgcc atgcttgtcc tatctctgtt atgtggtggg agcaccacaa tgaactctta
     1501 tctctttaaa gccataagcc aaaataaatc ctttctaccc ta
//
