LOCUS       XM_039080214            4711 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to H3 histone, family 3B
            (RGD1564548), mRNA.
ACCESSION   XM_039080214
VERSION     XM_039080214.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4711
                     /gene="RGD1564548"
                     /note="similar to H3 histone, family 3B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 171 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:500882"
                     /db_xref="RGD:1564548"
     CDS             3943..4353
                     /gene="RGD1564548"
                     /codon_start=1
                     /product="histone H3.3A-like"
                     /protein_id="XP_038936142.1"
                     /db_xref="GeneID:500882"
                     /db_xref="RGD:1564548"
                     /translation="MARTKQTARKSTSDTAPRKQLATKASCKSAPSTGGVKKPHRYRP
                     GTVALREIRCYQKSTELLIRKLPFQRLVREMAQDFKTDLRFQSAAIGALQEASEACLV
                     GLFEDTNLCAVHTKHVTIRSKNIQLARRIRGERV"
ORIGIN      
        1 aaaggaggga ggacaatgaa acttctgagt ttctatgcat tgatgttgtc aaaggtttca
       61 ctgtccagta tgtggatgcc atgtgccatc ctcatttgtg ttgatgctgg agtctttact
      121 cgacgtttct ttatactctt catttcttct ctgacaagtc aaggcctgcc agagttctca
      181 ctttaccttg atgctgacct cctagagtaa tgtctctagc tgctggcaag agagtagggg
      241 gaggtcacgc tcacactgaa tgtctggtgg agggtgatgg gacctcagag gaaactggag
      301 accatgtgga gtagacattg ctcctttacc caacttatta cctactccat aactgctgac
      361 tgggtctctg ctgtttaacg acgtgggagg agcaggtagt gatatggatt gtgagcataa
      421 gttgttggat ggagagtgct aagagccctg tggaggacct tcatcatgag aggaaaaatt
      481 gggcatttgc atctagcagt ggttccaccc gaaacgttat ggttagatct gagtctggag
      541 tgaggggttc attatagatg tacggaggtg agaggaagac gctctcagtg tggagttatc
      601 aaatccacag caaagccttt agacatgtga gtgaaggaag aggacaactg gaaggaacct
      661 ggtggttgac cccctgaatg ctaccctggt agagggatgt gaaaagtggg gaatataata
      721 gaggccctgt ggccactatg cttaatggaa tggcaggtcc taaatattaa aattaaactc
      781 ccacttcact tggcaatctg agcatataca caaagggaac agaactgtgc tcactgcagt
      841 tatgacagga gtcaaaaagt aggagcaggg tgtggtactg aatgtctaaa attccaataa
      901 ttgggaagcc gagacagggg gactgctaat ttgagtctgg gctatacagc agattttagg
      961 acagtgagac ctaacataac ccctttaggt ccccaagaaa tggagagagg aaaggaggaa
     1021 aggacagagg gaagaagaga gggagagaag caacctatcc caatctattt atcagcaacc
     1081 atatggatga gaaaaatgtc cgcacacagt ggaatactat gcagatactg tttattctaa
     1141 caacatgagt gggaccagaa gatactgtgt taggctatga tggttacaag gaagactggg
     1201 gcctcacaga ccttccagac ctgtacttct cacagcagcc ttctctctgc cacccctaac
     1261 actggctgtc tctttctcag ataaacaatt agcctgtgac atcattcacc catgaactct
     1321 gagacagctc atatcatgga ggttgagagt aagacagtgg ttgacagagg ctgaggaagg
     1381 aaggcaggtg gagagcatgg gggaaggtta gctcgtggat actgagttgc agtcagccag
     1441 gacaaataaa tctgttctcc cactctacct tggagtgact gtagatcatg gcaacatact
     1501 agagatttca gagactagca ggaaggacac tggatatttt catctcagaa aagcaatgat
     1561 ccaactacag cagtggatag acttgccctc attttatctt tattatgtaa tgcgaactac
     1621 cacgtggtac catacacatg cacacacaca cacacacaca cacacacaca cacacacaca
     1681 cacttgaata tatacacaca gtttttgtgt gtcaattaaa aatctaaaaa taagagagag
     1741 aatactacac cctaatatgt tcatatggtc ttctcagaca ttcttcttag tgctttcgaa
     1801 gagtcactta catttttccc tatagcattg gccccaattt aggaagttgg gcaagcaaag
     1861 ggacactcaa aggggacagg acacagacaa caagaagaca gttctagaat catatgtggg
     1921 catccactct gaactctcct tttagcatag agtagaaggg aatggagctc tgtggagaaa
     1981 gaggcccaat gactgccttt tggaggattt ggatcaattc acaaagtaag tggattccca
     2041 gcaacaaaaa ggagtcactg gggtcagaac tctgttgtct gaaggttggg gtcttccaac
     2101 attattgtaa ctctcaagga ctatgaggga tacaaggaag actgaggcct cacagacctt
     2161 ccagacctgt acttcccaga gcagccttct gtctgccacc cctaacactg gctgtctctt
     2221 tctgcttatg attattgaag gcattcatgt gaaaataggg ttttccctgt cttccagggt
     2281 tcagtttcct gctgctgttt cccacctgaa gctgtaattc tccatttgtg gctcaataac
     2341 cagttcctgg gtggctaatt acaggccata tgctcctggg gctggcacgc tggagaggca
     2401 gacggccgtg ctcccacgct tgctgctgtt ctcatttctt tttggacctg gtgctccaag
     2461 cctgtccttc agtggctccc ggtggctcta gaagaccgct ttttctctta gccactgtgt
     2521 ggctgtgcag gtgaccccga ctgggcttaa ctgggcatgc actcgtcatc cttccagcat
     2581 ctcagtgtca aaccagttgg caaaaatcaa tgaaagcaga tgatgtctcc acggcttatg
     2641 tcccagccag gtgggtgatg gagtgggaca agctctggcc tggggttctg caagttgagc
     2701 tccagttctg atggaggaaa ttgtgaccag agttttggtg acctccctac ctctctgatt
     2761 cttctcattc ttacccacat gcgcggacac tggtgacatc cacagtttgt agctttcttc
     2821 taggtgtctg cagaggtaat ggtggacatt aaaacaggtc ggagcccctt ccagatgcaa
     2881 agtcctataa aagctgatta ctgcctttgt ctttgagtct ctgtcatcta ggacagagac
     2941 tgatcgtggc gtggagcata caagctacgc tcttgttgaa acacaagttt actagaatcc
     3001 agggtctgag ttaaagattc aaataagtca gatttgatca ctggttaact tgagcatcca
     3061 gagactcaaa ggaacaaagg aacctcatgg tttttttaaa cttctattta atttgctctt
     3121 tgaaagtttc atactagtac atactgtgca ctgatcactg tcactcaacc ttctctgatc
     3181 ccccgcccga cacatcctcc ctacaagtcc atttcctcct ttcacgtctt cgtgttttgc
     3241 tttctgagcc ctcaagtcaa taagggccat ccgtgtgatg atgcatctga gattagcatg
     3301 ggagcctagt gagctcctca gtgcatttgc agcagaaggc ggtgtttctc tcgtccagaa
     3361 tatatccatc caatagggga accagcatcc gaaattggtt tccctaaatg ggaagacaat
     3421 tgctttcagg acacacagcg gggaagacaa ccagacgcct ggatagtcag tctgggcgaa
     3481 acacgtctgg atgagcctta tctctgggga aaaaaaatca ctctcctgtt cttcctggaa
     3541 cttgacatac aatctggagg aggaagaaga agagaaagac gatgaggatg agcaggaagg
     3601 ggaattagag aaagaagtgg gacaggaagg aaggagagag aggaagggag gaagagggta
     3661 aaggagaaag aggggggcgt attggttaga ggaacagtgt ggaagtatgt ggtaataact
     3721 tggtctctcc gtagagactt ctgtcatctc catgatgacc tatgacagga cattataaaa
     3781 ccgtggttga tcgtctgttg attatgaagt ccctctaatt catgaaaata ctatagtcgg
     3841 ttcgcagcct tcgccgcgct gctgctgcta acaccagcgc cgccttttgc ttgctgagct
     3901 ccagccgaag aagaaggagg gtaagtaagg aggtcccatt ccatggctcg tacaaagcag
     3961 actgcccgca aatccaccag tgatacagca cccaggaaac aactggctac aaaagcctct
     4021 tgcaagagtg caccttctac tggaggggtg aagaaacctc atcgttacag gcctggtact
     4081 gtggcactcc gtgaaatcag atgctatcag aagtccactg aacttctgat tcgcaagctc
     4141 ccctttcagc gtttggtacg agaaatggct caggacttca aaacagacct gcgcttccag
     4201 agtgcagcta ttggtgcttt gcaggaggca agtgaggcct gtctggttgg cctttttgaa
     4261 gataccaacc tgtgtgctgt ccataccaaa catgtaacaa ttaggtcaaa aaatattcag
     4321 ctagcacgcc gcatacgtgg ggaacgtgtt taagagtcca ctatgagggg aaacatttca
     4381 ttctcaaaaa aaatattttt ccctcctctt cttgttttca gtagttctga atgttagata
     4441 tttttttcta tgggtcaaag gtacctaagt atatgattgc gagtggaaac ataggggaca
     4501 gaatcaggta ttggcagttt ctccacattc atttgtgtgt gaatttttaa tataaaagca
     4561 agatgtacac cattaatgca agcaaatgtt tcagtgaaca catttcaaca gttcaacttt
     4621 ataacaatta taaataaacc tgttaaaatt ttctggacaa tgccagcatt tggatttttt
     4681 ttaaataagt aaatttctta ttgacagcaa c
//
