LOCUS       XM_223005               1543 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Mdes protein (RGD1564463),
            mRNA.
ACCESSION   XM_223005
VERSION     XM_223005.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_223005.9.
            
            On Jan 21, 2021 this sequence version replaced XM_223005.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1543
                     /gene="RGD1564463"
                     /note="similar to Mdes protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 24
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 103 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:289322"
                     /db_xref="RGD:1564463"
     CDS             113..1087
                     /gene="RGD1564463"
                     /codon_start=1
                     /product="sphingolipid delta(4)-desaturase DES1"
                     /protein_id="XP_223005.2"
                     /db_xref="GeneID:289322"
                     /db_xref="RGD:1564463"
                     /translation="MGSRVSREDFEWVYTDEPHAQRRREILAKYPEIKSLMKPDPNLI
                     WIITAMILVQLASFYLVKDLEWKWLIFWSYVFGSSINHSMTLAIHEISHNFPFGHHRA
                     LWNRWFGIFTNLPFGIPYSISYKMYHIDHHRYLGTAGIDVDAPSDLEGWFFCTTFRKL
                     VWVAFQPFFLLFRPYFVNPKPMTYLETINIMSQITFNIVIYHVWGIKSLVYMLAASLL
                     GLGLNPISGHFIADHFMFSKGQDTNSYYGPLNFFMFNGGYHNEHHDFPSIPGSRLPQV
                     RKIAAEYYDELPHHTSWVKVLYDFVTDDTMSPYSRIKRPPKGNEVLHK"
ORIGIN      
        1 cccactcacc ccaccacagg cacctgcaga ccagagctag cagcaggctc tacctccttt
       61 gctttcaaga ggttggactg ggagcagaac ccagagaggt ccacgcagag ccatgggcag
      121 ccgcgtttct cgggaagatt ttgagtgggt ctacacggat gagccgcatg cgcagagaag
      181 acgggagatc ctggcaaagt atccagagat aaaatccttg atgaagcccg accctaacct
      241 gatctggatc ataaccgcaa tgattctcgt ccagttggct tccttctact tagtcaaaga
      301 cttagagtgg aaatggctca tattttggtc ctatgtcttt ggcagctcta ttaaccattc
      361 aatgactctg gctatccatg agatttccca caacttcccc ttcggccacc acagggccct
      421 gtggaaccgc tggtttggga tatttactaa tctccctttt gggattccat attcgatttc
      481 ctataaaatg tatcacatag atcaccaccg ataccttggg actgctggca ttgacgtgga
      541 tgctccttct gaccttgagg gctggttctt ctgcaccact ttcaggaagc ttgtctgggt
      601 tgctttccaa cctttctttc tcttatttcg accttatttt gtcaacccca aaccaatgac
      661 ttacctggaa actattaata ttatgagcca gatcactttt aacattgtca tttaccacgt
      721 ctggggaatt aagtccttag tctacatgtt ggcagcctct ctccttggct tgggtttgaa
      781 tcccatttct gggcatttta tagctgacca cttcatgttc tcaaagggac aagacacaaa
      841 ctcctattat gggcctctta actttttcat gttcaatggc ggctaccaca acgaacacca
      901 cgacttcccc agtattcctg gaagccgtct tcctcaggtg aggaaaatcg cagctgagta
      961 ctatgatgag ctcccgcatc acacctcctg ggtgaaggtg ctgtatgatt ttgtgacgga
     1021 tgacacaatg agcccctact ccaggataaa gaggccaccg aaagggaacg aggttctaca
     1081 taaataaaca ttccctaggg ccaaagaaaa accttcccta gaacgttata atagttgact
     1141 atgtggaaat atctgcccca tttggtttct ctcactgata atttaacttc gagcactgtc
     1201 ccactcatca agacctctgc caatgagcta tcctcccagc ccgaactttt gtccggttaa
     1261 acttgggatc agtgacggtc agagctgtct tgctacaatt taaactcaga tctccgtgat
     1321 gtcaagattt gactctggtt ttcactaaac ctgaccttta cagtgctcaa ctctgcctac
     1381 agggtgcttg cttattgata gtgaattatc atttcttgtg gtgtcttcat ccatgtctat
     1441 aactttctta gaacatcatg aaatggttac tttactacat gatttataac attaagtttc
     1501 attttaataa aaatgctaac gaactgctgt caatccaaat gca
//
