LOCUS       XM_039106083             618 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Proteasome subunit beta
            type 3 (Proteasome theta chain) (RGD1564425), mRNA.
ACCESSION   XM_039106083
VERSION     XM_039106083.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106083.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..618
                     /gene="RGD1564425"
                     /note="similar to Proteasome subunit beta type 3
                     (Proteasome theta chain); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     Proteins, and 44% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:296169"
                     /db_xref="RGD:1564425"
     CDS             1..618
                     /gene="RGD1564425"
                     /codon_start=1
                     /product="proteasome subunit beta type-3-like"
                     /protein_id="XP_038962011.1"
                     /db_xref="GeneID:296169"
                     /db_xref="RGD:1564425"
                     /translation="MSIMSYNGGAITATKGKNCVAIAADRHFRIQAQMVTTDFQKIFP
                     MGYRLYIDLAGLGTDVQTVAQHLKFRLNLYELKEGQQIKPYTLLSMVANLLYEKRFGP
                     YYTEPVIAGLDPKTFKPFICSLDLIGCSMVTNDFVVSGTCSEQMYGMCESLWEPNVDL
                     EHLFETISQAMLNAVDQDAMSSMGVIVHIIEKDKITTRKLKAQMD"
ORIGIN      
        1 atgtctatta tgtcctataa tggaggggcc atcacggcca cgaagggaaa gaactgtgtg
       61 gccattgctg cagacaggca tttcagaatc caggcccaaa tggtgaccac agacttccag
      121 aagatctttc ccatgggtta caggctctac atagacctag ccggcctggg cactgatgtc
      181 cagacagttg cccagcatct caagttccga ctgaacctgt atgagctgaa ggaaggacag
      241 cagatcaaac cttacaccct cttgagcatg gtggccaacc tcttgtatga gaaacggttt
      301 ggtccctact acacagaacc tgtcattgct ggcttggacc cgaagacctt taagcccttc
      361 atttgctctc tggacctcat tggctgttcc atggtgacca atgacttcgt agtcagtggc
      421 acctgctctg aacaaatgta tgggatgtgc gagtctctct gggagcccaa cgtggatcta
      481 gaacatctgt ttgaaaccat ttctcaggcc atgctgaatg ctgtggacca ggatgccatg
      541 tccagtatgg gcgtcattgt ccacatcatt gaaaaagaca agatcaccac caggaaactg
      601 aaggcccaga tggactaa
//
