LOCUS       XM_039096457            1985 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to isopentenyl diphosphate
            delta-isomerase type 2 (RGD1564347), mRNA.
ACCESSION   XM_039096457
VERSION     XM_039096457.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096457.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1985
                     /gene="RGD1564347"
                     /note="similar to isopentenyl diphosphate delta-isomerase
                     type 2; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 87% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:364764"
                     /db_xref="RGD:1564347"
     CDS             477..1160
                     /gene="RGD1564347"
                     /codon_start=1
                     /product="isopentenyl-diphosphate delta-isomerase 2-like"
                     /protein_id="XP_038952385.1"
                     /db_xref="GeneID:364764"
                     /db_xref="RGD:1564347"
                     /translation="MSDVTVDWIDKHQLERLDEMMIVVDENDKVIGADTERNCHQNKN
                     IEKGLLHRAFSVALFNSEKKVLIQRRADTKLTFPGYYTDSCCSHPLSNPEEMEEKDAL
                     GVKKAALRRLQAELGIPQDQVSLEDIVFMKRYHYKAKSDAVWGEHEVCYLLLIKKDVK
                     ICPDPSEVSSFSYLTREELEELLERGARGEVQVTPWLRFVVEQFLYAWWPYLDEATRF
                     IELDKIYRV"
ORIGIN      
        1 tggtcatggt gtctgttcac agcagtaaaa ccctaactaa gacagacact aagagggaga
       61 cactagcctt tctatgggtg aacatgactt tctggaaaga ctatatagaa tgtctccagg
      121 tctgttccaa ccgccaggcc ttcattttga aatatgtcac aaacagcatt acatgtactt
      181 ttcctcggta ttcattcatt ttgtggagat ttacctttgg gtcatctttg aaaagactca
      241 agggaacttg agggctatgt tctcactcag aaagtcatca agaggttctc tacagaaata
      301 tacaagtgga aacacacatg ccctgttggt acctaacagc actattgcgt ccgtagatag
      361 tgttttttgt cattgaggga tgaaggtgtg tgatgacctt ggaggtgtct gataacaaat
      421 agcaaaacag tagatggtgc tactctttta cacaggtcgg atcacagcta gtagacatgt
      481 ctgatgtcac tgttgactgg atcgataaac accagctgga gcgtttagat gagatgatga
      541 ttgttgttga tgaaaacgat aaggtcattg gtgcagacac tgagaggaac tgccatcaga
      601 ataaaaacat tgagaaaggg ctgctgcacc gagccttcag tgttgctttg ttcaactcag
      661 agaagaaagt tctgattcag cgccgagcag acacgaagct taccttccct gggtactata
      721 ccgattcctg ttgtagtcat ccactgagta atcctgaaga aatggaggag aaagacgcct
      781 tgggagtgaa gaaggcagcc ctgagacggc tgcaggctga gctgggcatc ccccaggacc
      841 aggtttctct agaggacatc gtgtttatga aaaggtatca ttataaggca aaatctgatg
      901 cagtctgggg agaacacgaa gtttgttacc ttctgcttat caagaaagac gtcaagatct
      961 gtccagatcc gagtgaagtc agtagcttca gctacctgac tcgagaagaa ctggaagagc
     1021 ttctagaaag gggggcccgg ggtgaagtcc aagtgacccc ctggctgaga ttcgtcgtgg
     1081 agcagttcct gtatgcatgg tggccttact tagatgaagc gacccggttc atagagcttg
     1141 acaagatata cagagtatga ggaaccggaa ataaaacact ggctgtgagg atgccccagt
     1201 tcagcactga gctcagggca gacccacagc tcagatgtta gctatgcacc cggaccaaaa
     1261 cagggaaagg actcttcttt tccagaaagc caaaaatcat tatcattaac tctgaatctt
     1321 cttttctttt ctttcttgac acagagctat gtatcccaga ccagcctcaa acttctcgtg
     1381 tagccaagga tgactgaatt tctgatcctc ctgcctccac ctcccctggc ccttggattc
     1441 caggcacaca ccagtatgcc tgctcggtgc tggaggctga acctgcagct tcacgtacag
     1501 cgcgcaaaca tgctaccaac aaccaatccc atcccgtggt ttcttgcctt ttttccccca
     1561 gttgcttcat ttctttattt tcaactgcct cggtgtggga aagaaatgta ttgttttccc
     1621 caaattagaa acagaggaac taaagaagag aggaacccct aaagatagag ccgatgtcaa
     1681 cgctgtaaga actgaagtta cacaaccacc tgaggcagcc cttgaatggc gggcatgcca
     1741 gtcctctcaa aggcctgagg ctttgtgtgg aggaaaccgt aagaacatta aatccagaat
     1801 aatctgttaa gcacccaaat ttggcaagac tagagtacct agctaatact taacttgtat
     1861 cctgctctga cttgcagcca ctggatagat aacctgtccg ctgggagcct ctgtcttcac
     1921 tgctatgcta actatttgta tagaacacag tcacgcagtc aaactcaaat cagttgggta
     1981 aatga
//
