LOCUS       XM_039087309            2226 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to microfibrillar-associated
            protein 1 (RGD1564148), mRNA.
ACCESSION   XM_039087309
VERSION     XM_039087309.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087309.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2226
                     /gene="RGD1564148"
                     /note="similar to microfibrillar-associated protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:287415"
                     /db_xref="RGD:1564148"
     CDS             105..1421
                     /gene="RGD1564148"
                     /codon_start=1
                     /product="microfibrillar-associated protein 1-like"
                     /protein_id="XP_038943237.1"
                     /db_xref="GeneID:287415"
                     /db_xref="RGD:1564148"
                     /translation="MSVPSTLMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKR
                     PDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLA
                     RHRKIVEPEVVGESDSEVGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKN
                     EEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEA
                     LKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYE
                     AWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKY
                     KFLQKYYHRGAFFMDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTH
                     LVDQDTTSFDSAWGQESAQNTKFFKQKAAGVRDVFERPSAKKRKTT"
ORIGIN      
        1 tcagcagtgt ggaacaaagc taagtgggaa gtggtattct gtttcttgct ctttgttgtt
       61 gggattcagt ccatttttgg agagtctccg cggcagccgt caccatgtcg gtcccaagca
      121 cactcatgaa gcagccgccc attcagtcta cggctggggc agtcccagta cgcaatgaga
      181 aaggtgagat ttcaatggaa aaagtgaagg taaaacgtta tgtgtccgga aaaagaccag
      241 attatgcccc tatggagtcc tcagatgaag aggatgaaga atttcagttc attaagaaag
      301 ctaaggaaca agaagcagag cctgaggaac aggaggagga ctcatctagt gatccccgac
      361 ttcggcgttt acagaaccgc attagtgaag atgtggaaga gagattggct cgacacagaa
      421 aaatagtgga acctgaagta gtaggtgaaa gtgactcaga agtaggagat gcttggcgta
      481 tggaacgaga agatagtagt gaggaagaag aggaagaaat tgacgatgaa gaaatagagc
      541 ggcgccgtgg catgatgcgg cagcgagcac aggagaggaa aaatgaagag atggaagtca
      601 tggaggtgga agatgaagga cgttctgggg aggagtcaga gtcagagtct gagtatgagg
      661 agtacacaga cagtgaagat gaaatggagc ctcgacttaa gcctgtcttc attcgaaaga
      721 aggatcgggt gacagttcaa gaacgagaag ctgaagcatt gaagcagaag gaactggaac
      781 aggaagcaaa acgcatggct gaggagcggc gcaagtacac cctcaagatt gtagaagaag
      841 agaccaagaa agagctagag gagaacaagc ggtcccttgc cgccctggat gcactcaata
      901 ctgatgatga aaatgacgag gaggagtatg aagcgtggaa ggtccgcgag ctcaaaagaa
      961 tcaagcgaga cagagaagac cgagaagcgc ttgaaaagga gaaagcagaa attgaacgca
     1021 tgagaaacct gactgaggaa gaaaggcggg ctgaacttcg ggcaaatggc aaagtcatta
     1081 ccaacaaagc tgtgaaaggc aaatacaagt ttttacaaaa gtattatcat cgaggtgcct
     1141 tcttcatgga tgaggatgaa gaagtttaca agagagattt tagcgcaccc actcttgagg
     1201 accatttcaa caaaactatt cttccaaaag tcatgcaggt caagaatttt ggacggtccg
     1261 gtcgcaccaa gtacacccac cttgtggatc aagataccac ttcctttgac tctgcatggg
     1321 gccaagagag tgcacagaac acaaaattct ttaaacaaaa ggcagcaggg gtacgagatg
     1381 tatttgaacg accatctgct aagaagagga aaaccaccta ggcttctaca tacttattcc
     1441 aactgtggga cacaagtgtg gcagaacttt cccctaatga ataaagaatt caagggacca
     1501 atcactgggc gagtaggcgg gacttccggg tctggaagag gaagagggga ggcaggagaa
     1561 aggaactacc gtttggaaaa gaagagatca tcatggaggc gcaatatagc tcttcctgtc
     1621 tcctgagaag aatgtacaat gtccaagggt gtcgtcagaa attacatcag cttgccatgg
     1681 ggaaagggaa atgcatcacc atgtgcctcc catcttcagt cttcctgccc tgagcaaggg
     1741 tgcgagaggc aagctacacc agagcatttg ttgtccttgt ggatggaggt tagagtaacg
     1801 gcacccagcg cctagtctct cagtccgctc tcaaactctc catctgttaa gcccaaacct
     1861 tgaccttctg ttttgcctct gtgttcctcc aagataggac tcagcctgga ggggtctggt
     1921 tagcattgcc atgttcatga ggggtcacag taacagttaa tgcctttgtg cagaaacaag
     1981 gtctccactg tgcctctcag ggtgaaaaca aagtccctag acagagttga cttccagaaa
     2041 aggctcctgc actaagtcag ccaacagact ccagagctaa tcggaaccag atgcaggttc
     2101 tttcgcttaa atatattaca agtcacagat ttattttttg aaagcaccta taataacaat
     2161 taaagtcata aaaagtgttt tccctggata gtttctccta gtcaaccaag caatatagtc
     2221 tgatac
//
