LOCUS       XM_039082886             697 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L29
            (P23) (RGD1564138), mRNA.
ACCESSION   XM_039082886
VERSION     XM_039082886.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082886.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 24% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..697
                     /gene="RGD1564138"
                     /note="similar to 60S ribosomal protein L29 (P23); Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 4 Proteins, and 79% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:367175"
                     /db_xref="RGD:1564138"
     CDS             1..585
                     /gene="RGD1564138"
                     /codon_start=1
                     /product="60S ribosomal protein L29-like"
                     /protein_id="XP_038938814.1"
                     /db_xref="GeneID:367175"
                     /db_xref="RGD:1564138"
                     /translation="MTRLKKLSTKGAKQNSQRNRPAPGMLTIKGGFWESGNLAQPAIR
                     AVGPVQEPHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMSFAKKHNKKGLKK
                     MQANKAKAVSARAEAIKALVKPQAVKPKMPKGSSHKLSRLAFIAHPKLGKKIRSYMAK
                     GRRFCQPKPKVQTKAEAKAPAQAPKGAQAPVKAP"
ORIGIN      
        1 atgacgaggc tcaaaaaact ctccaccaaa ggggccaagc aaaacagcca acgaaacagg
       61 cctgcacccg gaatgctaac catcaagggt ggattctggg aaagtggcaa cctggctcaa
      121 ccagccattc gtgctgtggg cccagtccaa gaaccacaca ccacacacaa ccagtcccgc
      181 aaatggcaca gaaatggcat caagaaaccc cggtcacaaa gatacgaatc tctcaagggg
      241 gtcgacccca agtttctgag gaacatgagc tttgccaaga agcacaacaa gaaaggcctg
      301 aagaagatgc aggccaacaa ggccaaggca gtgagtgcac gcgcagaggc catcaaggcc
      361 ctcgtgaagc ctcaggctgt caagcccaag atgccaaagg gctccagcca caaactcagc
      421 cgtctggctt tcatcgctca ccccaaactt gggaagaaga ttcgaagcta catggccaag
      481 ggtcgtagat tctgccaacc aaagcccaag gttcaaacca aggcagaggc caaagctcca
      541 gcccaggctc ctaagggtgc ccaggcccct gtgaaggccc catagaaaag gctcctgcca
      601 gtgtgaagac agacggacgg cagtgacaca cccacctaca cactatctgc agatgaccag
      661 tgttctatgc tgtttttaca aataaacttg aaacaag
//
