LOCUS       XM_039103900            1488 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Cln5 protein (RGD1564125),
            mRNA.
ACCESSION   XM_039103900
VERSION     XM_039103900.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 30% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1488
                     /gene="RGD1564125"
                     /note="similar to Cln5 protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 63% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:310166"
                     /db_xref="RGD:1564125"
     CDS             1..1488
                     /gene="RGD1564125"
                     /codon_start=1
                     /product="ceroid-lipofuscinosis neuronal protein 5
                     homolog"
                     /protein_id="XP_038959828.1"
                     /db_xref="GeneID:310166"
                     /db_xref="RGD:1564125"
                     /translation="MDVGQQNVKGTLIPGQDKLNPWGTLRDARCIPSLPGSQAPLIIE
                     RPTPWPGSHRDFRESVGPGGAHWRQALALALLGLAATLGASPTSGQRWPVPYKRFSFR
                     PKTDPFCQAKYTFCPTGSPIPVMKDNDVIEVLRLQAPVWEFKYGDLLGHFKIMHDAIG
                     FRSTLTGKNYTIEWYELFQLGNCTFPHLRPEVNAPFWCNQGAACFFEGIYDKHWKENG
                     TLSLVATISGNTFNKVAEWVKQDNETGIYYETWTVRASPGKGAQTWFESYDCSNFVLR
                     TYEKLAEFGTEFKKIETNYMKIFLYSGEPIYLGNETSIFGPKGNKTLALAIKKFYGPV
                     KRYSSTKDFLLNFLKIFDTVIMHREFYLFYNFEYWFLPMKPPFVLEKKKETPLCQNNV
                     RGNPFTYPTYDIYRLVTASLCCCYSPSTSIHILPGLCLHWCLWSPSPPGAPCRKYSIC
                     QDSRKEAETLIVLAKVNGLQLLDLSHGDSLIPRLTCFLGPPFLLQ"
ORIGIN      
        1 atggatgtgg ggcagcagaa tgtgaaaggt accctgattc ctggtcaaga taagttgaat
       61 ccctggggga ccttaagaga tgccaggtgc attcccagtc tcccaggaag tcaggcccct
      121 ctcatcatag agaggccgac gccctggccc gggagccacc gggacttcag ggagtccgtg
      181 gggccaggtg gagcgcactg gcgccaggcg ctcgcgctgg cgctactggg gctggcggcc
      241 actctgggcg cgtccccgac gtctgggcaa cgctggcccg taccctacaa gcgcttctcc
      301 ttccgtccga agacagatcc cttctgtcaa gccaagtata ctttctgccc tactggctca
      361 cccatcccag ttatgaagga caatgacgtc atcgaagtct taaggctaca agcccctgtt
      421 tgggaattta aatatggaga cctcctggga cacttcaaaa tcatgcacga tgccattgga
      481 ttcaggagta cgctgaccgg caagaactac acaattgaat ggtatgagct tttccagctc
      541 ggcaactgta catttcccca ccttcggccg gaagtgaacg ctccgttctg gtgtaaccag
      601 ggggcagcct gcttctttga aggaatttac gataaacact ggaaggaaaa cgggacgttg
      661 tctctggttg caaccatatc cggaaacacg tttaacaaag tggccgagtg ggtgaagcag
      721 gacaatgaga ctgggattta ttacgagaca tggacagtcc gggccagccc aggaaaaggg
      781 gcgcagacat ggtttgaatc ctacgactgt tcgaattttg tcttaaggac atatgagaaa
      841 ttggctgaat ttggaacaga attcaagaag atagaaacaa actatatgaa aatatttctt
      901 tacagcggag aaccgattta cttgggaaat gaaacgtcta tttttgggcc caaaggaaac
      961 aagacccttg ctttggccat aaaaaaattt tacggccccg tcaaacggta ttcgtcaacc
     1021 aaagattttc tgttgaattt cttgaaaatt tttgacacag tgattatgca cagagagttc
     1081 tacctgtttt ataactttga gtattggttt ctacctatga aacccccctt tgtcctggaa
     1141 aaaaaaaaag aaacccccct ttgtcaaaat aacgtacgag gaaacccctt tacctacccg
     1201 acatacgata tttaccgact tgtgacagcc tccctctgct gctgctactc tccatccacc
     1261 agcatccata ttctcccggg gctgtgccta cactggtgtc tttggtcacc ttcacctcct
     1321 ggggcgcctt gtcggaagta cagtatatgt caagactccc ggaaagaagc agaaacctta
     1381 attgtattgg ccaaagtgaa tggattgcaa ttactcgatc tcagccatgg agattctttg
     1441 atcccaaggt taacatgttt tctcgggcca ccttttctgt tacagtag
//
