LOCUS       NM_001109259            2849 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 8 open reading frame
            34 (C5h8orf34), transcript variant 1, mRNA.
ACCESSION   NM_001109259 XM_001065792 XM_575749
VERSION     NM_001109259.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2849)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2849)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Oct 5, 2010 this sequence version replaced NM_001109259.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.26119.1,
                                           SRR26360194.1676727.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-521               JAXUCZ010000005.1  12559252-12559772   c
            522-669             JAXUCZ010000005.1  12424626-12424773   c
            670-801             JAXUCZ010000005.1  12416850-12416981   c
            802-930             JAXUCZ010000005.1  12384135-12384263   c
            931-959             JAXUCZ010000005.1  12372241-12372269   c
            960-1132            JAXUCZ010000005.1  12333537-12333709   c
            1133-1299           JAXUCZ010000005.1  12323788-12323954   c
            1300-1435           JAXUCZ010000005.1  12223768-12223903   c
            1436-1521           JAXUCZ010000005.1  12171327-12171412   c
            1522-1598           JAXUCZ010000005.1  12151205-12151281   c
            1599-1646           JAXUCZ010000005.1  12088429-12088476   c
            1647-1740           JAXUCZ010000005.1  12062867-12062960   c
            1741-1797           JAXUCZ010000005.1  12024182-12024238   c
            1798-2849           JAXUCZ010000005.1  12021000-12022051   c
FEATURES             Location/Qualifiers
     source          1..2849
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q11"
     gene            1..2849
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /note="similar to human chromosome 8 open reading frame
                     34"
                     /db_xref="GeneID:500390"
                     /db_xref="RGD:1564053"
     exon            1..521
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     CDS             453..1841
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C8orf34 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C8orf34 homolog isoform
                     1"
                     /protein_id="NP_001102729.2"
                     /db_xref="GeneID:500390"
                     /db_xref="RGD:1564053"
                     /translation="MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDH
                     LQSKQGNRGQLQRTLSGSAALWAESESSEPKGTRRDLRSYDKPWQMNAKKPKKSKSDL
                     AVSNISPPSPDSKSLPRSVDHPKWTWRTKPQSRDFDELNHILQESKKLGKALEKLSRS
                     IATSDELDKETVAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESE
                     DSSSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNED
                     DAMELLEDLDDLRMEGVTSLVLSGSKFNQGRPAHPAEPQAKVTLNICSRCARLQGDNM
                     MERTEDTLQVFPSPDEIIPDSLDSLPGTEETLMEEGEDFEKTSNLTEPGEASSGGYSL
                     KSYMEEDESLKQLQVVHQPWLLPSDTESDGIEAEQDKRSADLLCVPCSSCPTLVYSGL
                     SVKQAKEFTSGP"
     exon            522..669
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            670..801
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            802..930
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            931..959
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1132
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1299
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1435
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1436..1521
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1598
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1599..1646
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1740
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1741..1797
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
     exon            1798..2849
                     /gene="C5h8orf34"
                     /gene_synonym="RGD1564053"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagcttgga gctgggctca caccgtggcg cgctctgggc ggctccgcgc tgtcgcccct
       61 gtggctcgcg ctgtccctgg ctcggctcgt ggagacgctg cacagacact agcctttggc
      121 caccggctcc tgctgctgct gccgcccaga ggacagacca gcctctgccc gcgatttccc
      181 cttggcagcg gcgctgcaga gagcgggtgg gcgcgagctg caggatgcga ggtagttctc
      241 ccctcacctc ggagttgtct gagttggcag agcctcgccc gggttccttg agtcctgctc
      301 ccttcgggtt cgctcctcac cggtttgcta gccatcgctg tgccaggaag cccaggcaac
      361 ccagctcctg ttgtgggtcc atcctgggcc agaggagggc tgtccccagc caaggtgcac
      421 tgtcttctct ctgctgaccc atctgttttc ccatggcgtc tcgtcaacag acccgaatcc
      481 aggcttacct ggagaaaaac aagatcggtc ctctgtttga ggaattaatg accaagttaa
      541 taactgagac acctgaccaa ccaatcccat ttctcattga ccatcttcaa tctaaacaag
      601 gaaaccgagg acaactgcaa agaactttgt cagggtcagc ggctctctgg gcagaaagcg
      661 aatcatcaga acccaaagga acaagaaggg atttgagaag ctatgataaa ccttggcaga
      721 tgaatgcaaa gaagcctaaa aaatcaaaaa gtgacctggc tgtttctaat atttctcctc
      781 catcaccaga ctccaaatca ttgccaaggt cagtagacca tcctaagtgg acctggcgga
      841 ctaaaccaca aagccgtgat tttgatgaat tgaaccacat ccttcaagag agcaagaagc
      901 tggggaaagc ccttgagaaa ctctctcgaa gtattgcgac atcagatgaa cttgataagg
      961 aaacagtggc tttcaattcc tcccttctga gacctcgtgt gattggggaa tggatcggca
     1021 gagcagaaaa cgatgccgat cccctcgcag ctgaaatgct gcagccgccg gtcccgcgga
     1081 gtaagaatga ctcatgggaa agtgaagaca gcagctctag tccggcggga agcttgaaga
     1141 tggagcccaa gacgaaggga ctaaagcaac agcagcagca gcataagaaa ctcctggctg
     1201 caatgctctc ccaggattcc ttcgagtcca tccacagccc cacgccatct gtaatagaag
     1261 aagacattga caatgaagac gatgcaatgg agttgctgga agatctggat gacttaagga
     1321 tggagggtgt aaccagcctg gtgctttcgg ggagcaaatt taaccaaggt cgtcctgctc
     1381 accctgccga gccacaggcc aaagttacac tgaacatctg ttcaaggtgt gccaggcttc
     1441 aaggggacaa catgatggaa aggacagaag acacattaca agtatttcct tctccagatg
     1501 agataatccc agactcattg gattctttac ctgggactga agaaacgctg atggaagaag
     1561 gtgaagattt tgagaaaaca tctaacttaa cagaaccagg agaagcctcc agtggaggat
     1621 actctctgaa atcctacatg gaagaagatg agtctttgaa gcaactgcag gttgtgcatc
     1681 agccatggct tttaccaagt gacacagaaa gtgatggaat tgaagcagaa caagacaaac
     1741 gttctgctga tcttctctgt gtgccatgct cttcctgccc taccctggtc tactcaggtc
     1801 tgtctgttaa acaggcaaag gaatttacaa gtggtcctta aggagactgt agctgactga
     1861 atccttacat atagtcctac tttgatgtac taaatgtaat ctctaagaaa tgttattttc
     1921 ctaatgttaa taataaacaa gcactcttgt aaggagggtg tgcatctatg tatagtccaa
     1981 ggacactaat tcagtcaatt ggctatggaa tcttatatcc tttgatgtgg tcagtgtctt
     2041 gggtttatgt tactttatat gtagttatta aaattaatgt ttgatatatt aaatgttggc
     2101 tgactcgagt gcttaaaaat ttctggattt taatttagct aaggttttct acctctattt
     2161 ttataatagt atctcatatt tcgggttaat aaacattaca cttgcccaca tgtgccatga
     2221 tatagcatta gtcctttgca gcagttaact gcttggtgtt agcctctgag atgtaaactc
     2281 tttgcattgg gaagaaattt accccccaca actgccccaa tatcattata ttaccattcc
     2341 tattaaaata tatcaatatg ttacttcagt aaagcaaaat aatgaataat gaaatgcatg
     2401 ccctcagagc acttgcaagg aaaatcactg gttcatttat ccaattagtg agacacatta
     2461 agacttccag tttaaatctg atgtatgcct cttttggaat gtgctatgca ttgattctaa
     2521 gtgaatggat ctcagttaat ctattatcta catttgctat ttttatctta tttgccttaa
     2581 acgcaagact ttttggtggg ctttaatgaa ttaatgctaa gttatacaac tctgtatagc
     2641 tgtgaaagaa acaattgtta aagactaaaa catagctaag gaataaacaa gcaatttctg
     2701 acttctgaat taagtcatgt ttataaatat aaatactaaa attataaatg atgtaataaa
     2761 ttttcttaca ttattgtttt tgtatgatga aactaatttt agtaataagt atttttatag
     2821 aatggaaata aattaaaggt ttatgtatt
//
