LOCUS       XM_017602294            1797 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to TAF5-like RNA polymerase
            II, p300/CBP-associated factor (PCAF)-associated factor
            (RGD1563991), mRNA.
ACCESSION   XM_017602294
VERSION     XM_017602294.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602294.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602294.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1797
                     /gene="RGD1563991"
                     /note="similar to TAF5-like RNA polymerase II,
                     p300/CBP-associated factor (PCAF)-associated factor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:367797"
                     /db_xref="RGD:1563991"
     CDS             70..837
                     /gene="RGD1563991"
                     /codon_start=1
                     /product="TAF5-like RNA polymerase II p300/CBP-associated
                     factor-associated factor 65 kDa subunit 5L"
                     /protein_id="XP_017457783.1"
                     /db_xref="GeneID:367797"
                     /db_xref="RGD:1563991"
                     /translation="MKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTV
                     LYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHP
                     NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLEL
                     WDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSS
                     GELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH"
ORIGIN      
        1 agaatataaa aggtagcttg tgacactctg gaggaggagg agagcgaaga cgatgacgta
       61 ggcacggaaa tgaagattct gcggggacac tgtggcccag tgtatagcac acggttcctc
      121 gcggacagct cagggctgct ctcttgttct gaagatatgt ccatcaggta ctgggacctg
      181 gggagcttca ccaacactgt gctgtatcag ggacatgcct accctgtgtg ggacgtggac
      241 atcagcccct acagcctgta ctttgccagt gggtcccatg accgtaccgc caggctgtgg
      301 tcttttgatc ggacgtaccc gctgaggata tatgcggggc acctggcaga tgtggactgt
      361 gtcaaattcc accccaactc aaactactta gctactggct ccactgacaa aactgttcgt
      421 ctatggagtg cccagcaggg gaactcagtg cggcttttta caggtcaccg aggccccgtg
      481 ctctccctct ccttttctcc caatggtaag tacttggcat ctgctggtga ggaccagcgg
      541 ttagagttgt gggacttggc ctctgggaca ctttttaaag aactgagagg ccacacggac
      601 agcatcacca gtctggcctt tagcccggac agcggtctga ttgcttctgc ctccatggac
      661 aactctgtac gcgtctggga catcagaagc acgtgctgca acacaccagc tgacggctct
      721 tctggggagc ttgtgggcgt gtacactggg cagatgagca acgtcctgag tgtacagttc
      781 atggcctgca acctcctcct agtgactgga atcacacaag agaatcaaga acattaagtt
      841 ttgatccagg tggaagactg ggtggggctg gaagagtggt cacagtccag gacgtgctaa
      901 aactgaatca gtgattgcaa aagagccttc ccctacccca catgcactct acacagccct
      961 ggtgcataag actccagttg agagctggga agctcccccc aggcctgagg cctcctgctt
     1021 catgcaggca tcctgctttt gcatctgtct cttcccagtg ggtgtactgg acagctgcag
     1081 aactctccct atagcagctg tagacagtct ctcctgtggc tgccccttga gggaagtggg
     1141 gacaaaacca ggatttttat tatataatta attttattat tgagaagagg aaacctagca
     1201 ctggcagcaa gtgactcctg gcactggcta taatacttgg aattttgagg ttcagggaat
     1261 ttagactctg gtggcccagt gtatcaggag aaaggggcac cataaccata tgctgtgctt
     1321 ctgtgggcag gcaggcaggt agcgactgag catgggctcc tgcagtgatg gtggcagagg
     1381 tggttcttcc attggctgca cttttgtcag cctttatacc ctggggagaa gcactatggt
     1441 gggcagaggg tgagcctcag cgctgcgcca gtcacctagg gttccagccc tacaccatca
     1501 acaaattatg ataaagagta attttgaata agtcacaaga tagacaagaa atgctggatt
     1561 taaagataac tttttgtggc ttgttggtct ttttttctcc ctcaatgacc tgcttccacc
     1621 tcactgcagt gttgatagtg aacgggatga atcatgagtg cacactcaaa aatatcgacc
     1681 atgctttaag gacaaagcaa gttctgatgt ctgctaaagg attaaatatt tctgttttct
     1741 gaaaagagtt attttgtatt ttgttttcta ttaaaatgta tttagtttca aaaaaaa
//
