LOCUS       XM_017602306            3334 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus protein phosphatase 4 regulatory
            subunit 3C like 2 (Ppp4r3cl2), transcript variant X1, mRNA.
ACCESSION   XM_017602306
VERSION     XM_017602306.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017602306.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3334
                     /gene="Ppp4r3cl2"
                     /note="protein phosphatase 4 regulatory subunit 3C like 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 61 long SRA reads, 7 Proteins"
                     /db_xref="GeneID:302447"
                     /db_xref="RGD:1563978"
     CDS             404..2770
                     /gene="Ppp4r3cl2"
                     /codon_start=1
                     /product="protein PPP4R3C"
                     /protein_id="XP_017457795.1"
                     /db_xref="GeneID:302447"
                     /db_xref="RGD:1563978"
                     /translation="MDDKLHSVKVFVLVEDEQWKIIGTGQISSKYIERLQGVCLLVHS
                     ESDGSQIMECKIYPNVPYHKQRGEIIVWSEAKNHGMAIYFQEPSGCQEIWEDICQVQG
                     KDPSVEITQEVTDDLETFADLLPIGNLFEMPNCELNTLEHIADLFTFVDKTPNHRERM
                     AMVLEKGSYIKKLLQLFNTCEKLKNMEALHFLNNIIKGILFLDDTRLLNIMFSDEFFM
                     DVVGCLEYDPALDQPKQYREFLLQNAKFREIMPITNSQLRQKIQETYRMQYVYDIVLP
                     APSIFDSNLLSDLNAMIIFNKSEIITMLQDDENFLLEALSQLKDNTVGYERWYELLLF
                     FKEFCIFAKALENQEKDELLKTLIKLGIMSALKVLVHMHDYQIQKAALDIFPYLVEYN
                     PCLVREYLLEEAQDSEDNDELLINVMIKQMIYDPDPEFSKDIILPAVLRALLDPENMH
                     VTANGCEKAKFLNFFYARCMGNLIAPILSTTVENDTDDNMVNICPNYQNAQLLGVILE
                     ILTFCVQYHSTYMKNYILNNNLLSRILMLMSSKHTFLILCAVRFMRKIISLKDEIYNL
                     YIIKKNLFEPIVNAFMHNGTRYNMLNSAIIELFEFIRQENIKSLIANIVENFFIAFES
                     IEYVQTFKGLKTKYEEEKKRESGIRRNLYNVIYQKIYCRHIKVMELKVKADICCREIT
                     EEEGAILPMGKEFPSHYDIIMKIKETNENENVIEHPKSNETSKCSSSCGDASSNKMSM
                     VHCSSLVPLVDYPYDTDGESDDDPYGNDENDDEDKDNEPLSKRPNLSS"
     polyA_site      3334
                     /gene="Ppp4r3cl2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tgtgacaatg ccttgagggt cctcaccaga agtgagtata cattactact gtgtacttga
       61 agacccagac ctatgatgca tgttaaataa atggaaatat cgcttcattt ggtttcctat
      121 gataaaaaca cacctcaaaa tcattgtaaa cgaaaagaat gtactggtcc tggtgaactg
      181 accctctagt caagttgaca gttgtttcct tgtagcaagt taacaggtct caaggaattt
      241 tgctgtttga ctccagttac tgctgcaata ataagaagaa aagaattgtg acatcatcga
      301 cattccttgc caaggtagca aggaatagtt acttctagat agactacaga aagccaaggt
      361 cttcactggg acgtggccta gtgaggcaaa accagagatc attatggatg acaaacttca
      421 tagtgtaaaa gtctttgtgt tggtggaaga tgagcaatgg aaaatcatag gtacaggaca
      481 aatttcatcc aaatacattg aacggctcca gggtgtgtgc ctgcttgttc actcagaatc
      541 agatggctca cagattatgg agtgcaagat atatcctaat gtgccctatc acaaacaacg
      601 aggggagata atcgtttggt ctgaagctaa gaaccatggc atggcaatat atttccagga
      661 accaagtggt tgtcaagaga tctgggaaga tatatgccaa gttcaaggta aagatccaag
      721 tgtagaaatc acacaagaag ttacggatga tctggaaact tttgcagatc tcctgccaat
      781 agggaacctg tttgaaatgc caaactgtga actcaataca cttgaacata ttgcagattt
      841 atttactttt gttgataaaa caccaaacca cagggaaagg atggcaatgg tcttggaaaa
      901 aggaagttac attaaaaaat tgctacagct tttcaacacc tgtgaaaaac tgaagaacat
      961 ggaagcctta cactttttga ataacatcat taaaggaatc ctttttctag atgatacacg
     1021 tttgcttaat atcatgtttt ctgatgaatt tttcatggat gtggttggat gccttgaata
     1081 tgaccctgct ttggatcaac caaagcaata cagagaattc ttgcttcaaa atgcaaaatt
     1141 cagggaaatt atgccaataa caaactccca acttaggcaa aaaatacaag agacctacag
     1201 aatgcaatat gtttatgata ttgtgttgcc tgcaccatcc atatttgatt caaatcttct
     1261 ttctgatctt aatgctatga ttattttcaa taaaagtgaa ataattacca tgcttcagga
     1321 tgatgaaaac tttttgcttg aagctctttc tcagttaaaa gataacactg taggttatga
     1381 gagatggtat gaattattat tattcttcaa ggaattctgc atatttgcta aggcattaga
     1441 gaatcaagag aaagatgaat tactgaaaac actaataaag ttaggaatca tgagtgctct
     1501 gaaagtttta gtacacatgc atgattacca aatacaaaag gctgctctag atatatttcc
     1561 ttatctagta gaatataatc catgccttgt tcgagagtat ctactggaag aagctcagga
     1621 tagtgaagat aatgatgagc ttctcattaa tgtaatgatc aaacaaatga tctatgatcc
     1681 tgatcctgaa ttttcaaaag acatcatttt gccagcagtt ctccgtgccc ttcttgatcc
     1741 agaaaatatg catgtcacag ccaatggatg tgaaaaagca aaatttctca atttcttcta
     1801 tgcacgttgc atgggtaacc tcatagcacc aattttgtct accacagtgg aaaacgacac
     1861 tgatgataat atggttaaca tctgtcctaa ttatcaaaat gcacaattgc tgggagtaat
     1921 tttagaaata cttacttttt gtgtacaata ccactcaaca tatatgaaaa attatatttt
     1981 gaataacaac ttgctcagca gaatcctgat gctaatgagt tcaaagcata catttctgat
     2041 tttgtgtgct gtccggttta tgagaaagat tattagtctt aaagacgaaa tttacaatct
     2101 ttacataatt aagaaaaacc tgtttgaacc tattgtaaat gcttttatgc ataatggaac
     2161 tcggtacaat atgttaaatt cagctattat tgagctattt gaatttataa gacaagaaaa
     2221 catcaagtct cttattgcaa acattgtgga aaactttttt attgctttcg aatcaattga
     2281 gtatgtccag acatttaaag ggttaaaaac taaatatgaa gaggaaaaga agagagaaag
     2341 tggaataaga agaaatttat acaatgtaat ataccagaaa atatactgca gacatatcaa
     2401 agttatggag ttaaaagtca aggcagacat atgttgtaga gaaatcacag aagaagaagg
     2461 agctattcta ccaatgggaa aagaatttcc aagtcattat gacataatca tgaaaattaa
     2521 agagacaaat gaaaatgaaa atgtaataga acacccaaaa agcaatgaaa cttctaaatg
     2581 ttcatcatct tgtggtgatg cttcttctaa caaaatgagt atggttcact gtagcagcct
     2641 ggttccttta gtggattacc catatgatac tgatggtgag agtgatgatg atccttatgg
     2701 taatgatgaa aatgacgatg aagacaaaga caacgagccc ctgagtaaaa gacctaatct
     2761 tagttcataa aatcacatga ggcctacaac tcttagctca aatataattc tataaatacc
     2821 acaaactgaa aaatctagtt aaaaaatctt ttgcctattg acatttaaat atagtagtat
     2881 acagagccaa aataatgaat aagaggcctc aattttatac aaagaaaacc tcccataata
     2941 tcgatgcata gtataaaata aagagcaact gaccaataac ttcttatcaa gaacatctta
     3001 ctttaccaac atggtttggg aggatgaaag agtttgataa agtaatacat tttttactaa
     3061 agtctttata ttagaagcaa ctgcaaaggt tttattgcaa agcctacttt caaaaaagga
     3121 tctagcaatg acatttatcc ataaactgaa gtttgtttaa aatatctttt gttgcattga
     3181 aggcaaagtt atattaatgt aaaagtaaag tgatactttt caatatttct gtgaacattt
     3241 aacagaactt cagcattgtg aatattaata ggaaaaacat tcagtgtaat tcagtatgta
     3301 ttttcatgaa taaagtgata tgcttgatct taaa
//
