LOCUS       XM_039088715             627 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12
            (RGD1563956), mRNA.
ACCESSION   XM_039088715
VERSION     XM_039088715.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088715.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..627
                     /gene="RGD1563956"
                     /note="similar to 60S ribosomal protein L12; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 long SRA read, 12 Proteins, and 82% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:303815"
                     /db_xref="RGD:1563956"
     CDS             1..603
                     /gene="RGD1563956"
                     /codon_start=1
                     /product="60S ribosomal protein L12-like"
                     /protein_id="XP_038944643.1"
                     /db_xref="GeneID:303815"
                     /db_xref="RGD:1563956"
                     /translation="MTLSDIHNYSLKWAFRLSVRRRQWCNFLQSSRIQVHPTPATSAM
                     PPNEIKVVYLRCTRDEVRATSALAPKIGPLRLSPKKVGDDIAKTTGDWKGLRITVKLT
                     IQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIAGQMRHQSL
                     ARELSGTIKEILGTAQSVGCNVDGRHPHDINSGAVECPAS"
ORIGIN      
        1 atgacacttt cagacatcca taactacagt ttgaaatggg cttttcggct ttcggttcgg
       61 aggaggcaat ggtgcaactt tcttcagtcg tcccgaatcc aggttcatcc gacaccagcc
      121 acctccgcca tgccgcccaa cgagatcaaa gtcgtgtact tgaggtgcac cagagacgag
      181 gtccgcgcca catccgcctt ggcccctaag atcggtcctc tgcgtctgtc tcccaaaaaa
      241 gttggtgatg acatcgccaa gactaccggt gactggaaag gcctcaggat tacagtgaaa
      301 ctgaccatcc agaacagaca ggcccagatt gaggtggtgc cctctgcctc tgccctgatc
      361 atcaaagccc tcaaggagcc accaagagac aggaagaagc agaaaaacat taaacacagt
      421 ggaaacatca cttttgatga gattgtcaac attgcagggc agatgagaca ccagtctttg
      481 gccagagaac tttctggaac tatcaaggag atcctgggta ctgcacagtc tgtgggctgc
      541 aatgtggatg gccgccaccc tcatgacatc aacagcggtg cggtggagtg cccagctagt
      601 taagaagcaa caagaaaata tttaaat
//
