LOCUS       XM_056984622            2762 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Nuclear autoantigen Sp-100
            (Speckled 100 kDa) (RGD1563917), transcript variant X1, mRNA.
ACCESSION   XM_056984622
VERSION     XM_056984622.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984622.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2762
                     /gene="RGD1563917"
                     /note="similar to Nuclear autoantigen Sp-100 (Speckled 100
                     kDa); Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 18 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:501176"
                     /db_xref="RGD:1563917"
     CDS             175..858
                     /gene="RGD1563917"
                     /codon_start=1
                     /product="nuclear autoantigen Sp-100 isoform X1"
                     /protein_id="XP_056840602.1"
                     /db_xref="GeneID:501176"
                     /db_xref="RGD:1563917"
                     /translation="MCLICGCTREEKVSSVQILTKYQSSSGKYGSMRREMMLRKSLES
                     YILICSMFGVIQKKEHFNEVFLNYFKENKVEIAHAITKLFPFLESLRDRSFITDKIYA
                     DSYEACGNSIPVEKVVYNVLSHLEKLPDPSFLWVLFNRVNLKEYPALREIYKSLETEL
                     QDRYSPQRRKQEEQKLATMQPSYEQGTNLHTHENWATENLQEPETPQNQVDEIIAISS
                     ESSECSEEK"
ORIGIN      
        1 aatttcacta gaatttccct caatcaccta ctaaaaccca ccccagctcg agggcctagc
       61 tttcgctctg ctttatgttc tctggacttg ttattgacca gaattgacgc cgggagaaag
      121 gctgaagcgt tccctgcgga ttctcccaga ccgaagggtt gtgaaccgga gcagatgtgc
      181 ctcatctgtg gctgtactag ggaagaaaag gtctcctcag ttcaaattct aacaaagtat
      241 caatcctcaa gtgggaagta tggcagcatg cggagagaaa tgatgctgcg aaagagcctg
      301 gagtcctaca tcttgatctg cagcatgttt ggagtgatcc agaaaaagga acattttaat
      361 gaggtatttt taaattactt caaggaaaat aaagtagaaa tagcccatgc aatcaccaag
      421 ctgtttcctt tcctagaaag cctaagggac cgctccttca tcacagacaa aatctatgct
      481 gattcttacg aagcctgtgg gaactcgatt cctgtagaga aagtggtgta caatgttctc
      541 agtcacctgg agaagttacc tgacccatca tttctatggg ttctgtttaa cagagtgaac
      601 ctgaaggaat atcctgcttt aagagagatt tataaaagct tggaaactga gctacaggac
      661 agatactctc cccagagaag aaaacaggaa gaacaaaaac ttgccaccat gcagccaagc
      721 tatgagcaag gaacaaacct acacacacat gaaaactggg caacagagaa cctacaggag
      781 ccagagacac cgcagaacca ggtggatgaa atcattgcga tcagcagtga gagctccgaa
      841 tgcagtgagg agaagtagga ccaagccctg ggaaccggga ctcaggaggc agatggacgg
      901 agagggtgtg gactctgtcc cctgggctcc agaatgcagg ccttccctca agatcttaca
      961 cctcatgtgt cccgactgac cactcttgga ggacatagtg gcgtccagtc tctgcacctt
     1021 acgttttctg acccttgtga agatgtggag agagtaacaa ggtcctggac cttagcgcag
     1081 ctgactccat gatgaagaac caatctggct gtgaaactca gtgtgtgggc agcaccacct
     1141 gccagaataa aaacaaaaat ctaatcctgg gctggagaga tggctcagtg gcactgactg
     1201 cccttccaga ggccctgagt tcaatcccca gctacctcat ggtggttcac aaccatctgt
     1261 gatgagatct gatgccctct tctggtgtgt ctgaggacag ctacagtgta ctcatatata
     1321 ataaataaat aaatctattt ttttctaatg gtgcatacct ttggtcctgg cactcagaag
     1381 gcagaggcag gaagaactct gtaagttcaa gaccaaatcc tggtctacag agaattccac
     1441 agccaaggcc acacaaagaa actctgtctc caaaaacaaa ctaataaagc aaaataaagt
     1501 tttcagtctg ctcaacatgt acttgagttt tgggctggag agatggctca gtggtgaaga
     1561 gcactgactg cttttccaga ggtcctgagt tcaattccca gcaactgcat gatggctcac
     1621 agccatctgt agtgggatcc gatgccctct tctggtgtgt ctgaagagag caatggtgta
     1681 ctcacatgca taaaataaat aaatcttttt ttttttttga aaaaaggaaa aagacctaat
     1741 ctactatagt tctgggaagg tctctaaata cactgcccct gcttccttga tttctgtagt
     1801 tctgcttctg gctaactgtt cttgttaact gaagtacgtc aacccaaaaa agaggttttg
     1861 tgcttaaaag ctcatcctga gaaaggcttg gggctagcta ccctgagatc ctgaacacac
     1921 agtgcagtcc ctgactggct aagaaagatg ttctctcagc ttaaatccgt gccccagcag
     1981 ccttctccag tggacagttt ctctgaccca caacagacag gtcagggtac tcttcaactt
     2041 tgttgatata ctcatgctag agttaaaaag aaaatgtatc tacaagtttt attttatttt
     2101 ttcctttcac atggccatgc ctatctaaag cataataaaa tatatattat gtttggcctt
     2161 tatccacatt tctttgcata aagctcacac ataacatctt tgactatata agaggacgag
     2221 atagcctggg ctacaaagtg atatttctgg gagtgtctgt ttggatcagg catttccagg
     2281 catgttgttc aaagaattaa agaagcaaaa accaaccata cagcataaag aaacaaagca
     2341 gtaatgtagg atagataccc tacatggagc attggaccct gagcacacat ctcttccaca
     2401 gcatctaacc actgcccagg gctttctcat gtgggtcaaa gagaagttgg ccatggccag
     2461 ttaaggtcac tggaagctga ccctcaggtc agcataacca gtcagtatgt taagacgtgt
     2521 gtgcatcttg atgtaggtga gtttcaggtt gttgagcaag ttgttgggaa agagctgtac
     2581 ctgtgtaact caatgcaaca aggggagtcc ctagttgcta tcccatccct atatttgcct
     2641 atcttagtga gatcctgtct caaaacaacg cagaccaaat caaaacgata aaataaaacc
     2701 aagagtttct ttcaaaatct aaccacatgt ctagaggaat agatcattca ttactacacg
     2761 tt
//
