LOCUS       XM_039087830             751 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to High mobility group protein
            1 (HMG-1) (RGD1563668), mRNA.
ACCESSION   XM_039087830
VERSION     XM_039087830.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087830.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..751
                     /gene="RGD1563668"
                     /note="similar to High mobility group protein 1 (HMG-1);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 17 Proteins, and 92% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:497907"
                     /db_xref="RGD:1563668"
     CDS             116..751
                     /gene="RGD1563668"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_038943758.1"
                     /db_xref="GeneID:497907"
                     /db_xref="RGD:1563668"
                     /translation="MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK
                     CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYISPKGETKKKFKDPNAPKTPPSAF
                     FLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIA
                     AYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEDEEDDDDE"
ORIGIN      
        1 tcccgctctc acagccattg cagtacattg agctccatag agacagcgcc ggggcaagcg
       61 agagccagac gggcactggg tgactctgtg cctcgcggag gaaaatcaac taaacatggg
      121 caaaggagat cctaagaagc tgagaggcaa aatgtcctca tatgcattct ttgtgcaaac
      181 ctgccgggag gagcacaaga agaagcaccc ggatgcttct gtcaacttct cagagttctc
      241 caagaagtgc tcagagaggt ggaagaccat gtctgctaaa gaaaagggga aatttgaaga
      301 tatggcaaag gctgacaagg ctcgttatga aagagaaatg aaaacctaca tctcccccaa
      361 aggggagacc aaaaagaagt tcaaggaccc aaatgccccc aagacgcctc cttcggcctt
      421 cttcttgttc tgttctgagt accgcccaaa aatcaaaggc gagcatcctg gcttatccat
      481 tggtgatgtt gtgaagaaac taggagagat gtggaccaac actgccgcgg atgacaagca
      541 gccctatgag aagatggccg ccaagctgaa ggagaagtac gagaaggata ttgctgccta
      601 cagagctaaa ggaaaacctg atgcagcgaa aaagggcgtg gtcaaggctg agaagagcaa
      661 gaaaaagaag gaagaggaag acgacgagga ggatgaagag gatgaggaag aggaggaaga
      721 agaagatgaa gaagatgatg atgatgaata a
//
